Gene detail information of Glyur000046s00004816 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G33460.1 | 8.00E-18 | ROP-interactive CRIB motif-containing protein 1 |
| NR | XP_004495460.1 | 1.25E-67 | PREDICTED: dentin sialophosphoprotein-like [Cicer arietinum] |
| Swissprot | tr|F4J424|RIC5_ARATH | 2.00E-23 | CRIB domain-containing protein RIC5 |
| trEMBL | tr|K7N4R4|K7N4R4_SOYBN | 8.00E-63 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G34975.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00046 | 206967 | 208322 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000046s00004816.1 | PF00786.23 | PBD | 33 | 63 | 2.70E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.109 |
| SRR1783600 | control | 4.206 |
| SRR1783602 | moderate drought stress | 9.216 |
| SRR1811619 | moderate drought stress | 9.323 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.029 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.836 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 33.177 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 32.488 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.402 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.730 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.452 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.228 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.358 |
| SRR2868004 | Drought Stress (root) | 6.145 |
| SRR2967015 | Control (root) | 8.298 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.363 |
| SRR9715740 | Leaf | 5.937 |
| SRR9715741 | Leaf | 7.630 |
| SRR9715739 | Root | 3.255 |
| SRR9715742 | Root | 6.919 |
| SRR9715743 | Root | 6.174 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 23.679 |
| SRR8749028 | MeJA induced 9h | 12.922 |
| SRR8749029 | MeJA induced 9h | 18.230 |
| SRR8749030 | Uninduced | 12.102 |
| SRR8749031 | Uninduced | 5.706 |
| SRR8749032 | Uninduced | 18.815 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 9.676 |
| SRR8400027 | Control - Root | 8.493 |