Gene detail

Gene detail information of Glyur000046s00004814

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G23400.1	7.00E-68	Plastid-lipid associated protein PAP / fibrillin family protein
NR	XP_004495358.1	3.69E-143	PREDICTED: probable plastid-lipid-associated protein 6, chloroplastic-like [Cicer arietinum]
Swissprot	tr\|Q9LW57\|PAP6_ARATH	2.00E-102	Probable plastid-lipid-associated protein 6, chloroplastic (Precursor)
trEMBL	tr\|Q5QJB6\|Q5QJB6_SOYBN	3.00E-138	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA20G34960.1}

Sequence

Transcript Sequence

>Glyur000046s00004814.1
ACTTCTTGTTGTCTTGTCTTCTTTTGCTCTTCTCTCTGTGTCACACACACAGACACATGAACACAAACACAAATCTCAATCACACACTCGAATTTGCCTCTTTCTCCTATAATAATATCTTCCAAGTTCCACACTTTCAGTTCCCAAACCCAACCCCCTTTTGGAAAATCACTGCATCTTCATGGCTTCCCTCAACCTCCTTCCTCACCCATCAACTTCTCTTTCTCACTCCCTACCATTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCATCTTGTTTTGTTCCTTGTTGCAGCATCCATGTTCTCACTCCAAAGGGTAACCTTCGAAGTACCTCTCGTTCTCTCAAGCCTGCCCTTGTTGTCAAATCGGCTGTGGGTGAGGCCTATGTGGCTGACCCTCCTTCAGCAGACACCTCTGATTCTATCTCTTCCTTGAAGCTCAATCTGCTGAGTGCTGTTTCCGGGCTAAATAGAGGTCTTGCTGCAAATGAAGAGGATCTGCAAAAGGCAGATGCAGCGGCTAAGGAGCTTGAAGCTGCTGGAGGACTGGTGGACCTCTCAGGACTAGTGGACCTTGATAAACTGCAAGGAAGATGGAAATTGATATATAGCAGTGCATTCTCCTCTCGCACTATAGGCGGATCCCGCCCTGGACCTCCCACGGGAAGGCTCNTTCCCATAACTCTTGGACAGGTTTTTCAACGTATTGACATCATAAGCAAAGATTTTGACAATATAGTAGAGCTTCAGTTGGGTGCTCCATGGCCCTTGCCACCCCTCGAAGTAACAGCCACATTAGCTCACAAATTTGAACTCATAGGATCTTCAAGGGTCAAGATAGTATTTGAGAAAACCACTGTGAAGGCAACTGGGAATTTGTCACAGTTGCCCCCATTTGAGATACCTCGAATTCCGGATGCATTTAGGCCTCCATCTAATACAGGAAGTGGTGATTTTGAAGTTACATATCTTGACGCGGATACCCGCATAACGAGAGGAGATAGGGGCGAGCTAAGGGTCTTTGTGATTTCATGAGTTCCTGATGTAGGCATGCACTATGCATTTTCTCTGTTGGACTGAAAAAACATTCCAACACCGGTGTCTGTCTTCTTTTTGTTTTTGTCTTTGTGTTGTCTTGTTATAAGTTCTTCAATATTGTAACATGGATATATACGGATAGAACCAAACCACACTATGTAGCTCCAAGGGAACAGGCTACTTTTTGTTTAAATGTAACATATTTCATCTTGAAGGAATAAATGCTTATAGATCATAGCATATGGATGCTAAAATACACT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00046	198737	201290	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000046s00004814.1	PF04755.7	PAP_fibrillin	86	283	4.80E-47

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	26.427
SRR1783600	control	26.391
SRR1783602	moderate drought stress	31.237
SRR1811619	moderate drought stress	31.013

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	43.399
DRR006520	Root Summer glycyrrhizin high producing strain	42.662
DRR006521	Root Winter glycyrrhizin high producing strain	48.213
DRR006522	Root Winter glycyrrhizin high producing strain	47.115
DRR006523	Root Summer glycyrrhizin low producing strain	41.450
DRR006524	Root Summer glycyrrhizin low producing strain	41.120
DRR006525	Leaf Summer glycyrrhizin high producing strain	387.577
DRR006526	Leaf Summer glycyrrhizin high producing strain	385.833

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	12.806
SRR2868004	Drought Stress (root)	21.643
SRR2967015	Control (root)	16.698

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	193.904
SRR9715740	Leaf	364.411
SRR9715741	Leaf	168.306
SRR9715739	Root	14.774
SRR9715742	Root	14.675
SRR9715743	Root	13.583

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	18.017
SRR8749028	MeJA induced 9h	13.887
SRR8749029	MeJA induced 9h	34.119
SRR8749030	Uninduced	7.648
SRR8749031	Uninduced	3.405
SRR8749032	Uninduced	11.239

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	29.427
SRR8400027	Control - Root	29.775