Gene detail

Gene detail information of Glyur000046s00004813

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G23410.1	0	fatty alcohol oxidase 3
NR	XP_004495357.1	0	PREDICTED: long-chain-alcohol oxidase FAO1-like [Cicer arietinum]
COG	YP_003397164.1	2.00E-71	glucose-methanol-choline oxidoreductase [Conexibacter woesei DSM 14684]
Swissprot	tr\|B5WWZ8\|FAO1_LOTJA	0	Long-chain-alcohol oxidase FAO1
trEMBL	tr\|V7BGM7\|V7BGM7_PHAVU	0	Long-chain-alcohol oxidase {ECO:0000256\|PIRNR:PIRNR028937}

Sequence

Transcript Sequence

>Glyur000046s00004813.1
ATGGGGAGAGATCATCAACAGTTTCATCCTTTACTGAGAGGTGGAAGAAGAAGAAGAAGAAGAGGAGGTGGTGGTGGCAAATGCATGCATGCTTTCTCTGCAGCTCAGATGGAATCGCTTGCAAGCGTGTGTGAGGCTGTGTTGCCTCCTCTTCAGCTACAATGCTTGAACAAAATTAGAGGGAATAATAATAATAATAATAATATTAATGTTGAACTTGAAGAACCAAGTCCAACCAAGGCTGAACAGTTCTTCTGGAAAGCTTCTGCCTCTCAATTCTCTATCCCTGATCAGGTTGCAGAGACAACATTGAAAAGAGCTCTGCCAGAAGCATTGATAGTCATTAGAGTGATTCTATGGATGCTGGCAACAAGGTTGGGCACTTTGTTGCTATGTGGATCTCTCTGTCTCAGTAAGAAATGGCCCTTCATCAATAACTTCTCAAATATTTCTTTGGCCAACAGAGAAAAGGTTCTGCAGAATTGGTTCAAGCACCGGTTCCTCACCCCTATTAGACTTGCATTTATCTACATCAAAGTCCTTTGCCTCCTTTGTGATGACAATGGTGAAAACCCAGCATGGGAAGCCATCGGATATCGGGTTGACACCGATGGGAACACGNGCAATATCCAAGGAGAGAGGCCTCTTGAAAAGGGAATAGTGGAAGCTTTGAATGANAATGATTTGAGCCTGCCTGAGTCTCTTTCTCAGAAAGGTCTTGAAATTGACACAGATGCTAAAAACANCATCCTCAAAGTCAAATGTGATGTAGTTATTGTTGGGTCAGGATGTGGTGGAGGAGTTGCAGCTGCTGTTCTTGCAAGCTCAGGCCAGAAGGTGCTTGTTCTTGAGAAGGGCAACTACTTCACTCCCGGGAATTATTCTTCTCTAGAAGGGCCCTCTTTGAATGAGCTTTATGAATTGGGAGGAACTTATGCATCCTGTGATGGGAAAATGGTTATTCTGGCAGGGTCAACAGTAGGTGGTGGTTCTGCTGTGAATTGGTCAGCGTCTATTAGAACACCAGATTCTGTGCTTAAGGAATGGGCAGAAGAACACAAGCTAGCACTTTTTTCAAGCCATGAGTATCTTTCTGCCATGGACGCGGTGTGCGAAAGGATTGGCGTAACCGATAAATGCGTGGAGGAAGGACTCCAGAATCAAGTTCTCCGAAAAGGTTGCAAGAGACTTGGTCTTCAGGTTGATTATGTGCCAAGAAATTCATCAGAACATCATTACTGTGGGTCTTGCAACTATGGTTGTAGGAGAGGAGATAAACAAGGGGCTGATGTTACATGGCTCGTTGACGCCGTGGATCATGGCGCNGTAATACTAACAAGATGCAAAGCTGACAGGTTCATATTGGTAAACAACAAGGAAGGATGTGTAAGAGGAAAGAAATGCTTGGGAGTGATGGCAAATGTTTTAACAGACAGCATCACATGGAGGCTGCAAGTTGAGGCCAAAGCGACAATTTCGGCTTGTGGGGCTCTTTGCACNCCCCCTTTAATGATCTCTAGTGGACTGAAGAATAAGAACATTGGCCGGAACCTTCATCTCCATCCGGTGCTAATGACATGGGGATATTTCCCAGACTCAATTCCTGATCTCAAGGGTAAAAGCTATGAGGGAGGAATAATCACTTCTTTCCACAAGGTGCTATCAGAGGACTCCAAAGTAAAAGCCATAATTGAAACTCCAGCATTAGGACCAGGATGTTTTTCTACCATGCTTCCCTGGGAATCTGGACTTGACTTCAAAGAAAGAATGCTCAAATATTCAAGGACTGTTCACTTGATCACAATTATTCNGGACAAGGGCACTGGAGAAGTTAGGAGAGAGGGTAGGATGAATTACGAGTTAGACNAATCGGACAAAGAGAACATCAGGGATGGACTGAAGCAGGCACTGAGGATTCTAATAGCGGCAGGAGCTGTTGAAGTAGGTACCCACAGAAGTGATGGGCAGAGATTTGAGTGCAATGGGAGTAATGAGAAGGAATTGGAGAGGTTTTTGGAATCAGTATGTGCAACAGGAGGGCCAATGTCACATGAAAAACATTGGACTATGTATGCCTCTGCGCACCAGATGGGAAGCTGCAGGATGGGCATGACTGAAAAGGAAGGCGCGGTTGATGAAAATGGACAGAGTTGGGAAGCACAAGGCCTATTTGTGTGTGATGCCAGTCTGCTTCCAACCGCAGTTGGTGTCAATCCCATGATAACAATCCAGTCTACTGCATATTGCATTGCGTCGCGAATTGCACTACTTTTGGGAATGGAAAAGAATTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00046	189977	194705	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0016614 oxidoreductase activity, acting on CH-OH group of donors

GO:0046577 long-chain-alcohol oxidase activity

GO:0050660 flavin adenine dinucleotide binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000046s00004813.1	PF00732.14	GMC_oxred_N	256	523	8.20E-67
Glyur000046s00004813.1	PF05199.8	GMC_oxred_C	616	749	3.20E-23

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.779
SRR1783600	control	2.731
SRR1783602	moderate drought stress	2.204
SRR1811619	moderate drought stress	2.238

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.756
DRR006520	Root Summer glycyrrhizin high producing strain	0.721
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.190
DRR006524	Root Summer glycyrrhizin low producing strain	0.106
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.210
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.240

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.592
SRR2868004	Drought Stress (root)	5.813
SRR2967015	Control (root)	4.480

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.107
SRR9715740	Leaf	0.199
SRR9715741	Leaf	0.295
SRR9715739	Root	2.479
SRR9715742	Root	3.303
SRR9715743	Root	2.320

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.635
SRR8749028	MeJA induced 9h	1.384
SRR8749029	MeJA induced 9h	1.259
SRR8749030	Uninduced	2.437
SRR8749031	Uninduced	5.173
SRR8749032	Uninduced	2.320

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.900
SRR8400027	Control - Root	5.880