Gene detail

Gene detail information of Glyur000046s00004808

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G14305.1	1.00E-78	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein
NR	XP_004495354.1	1.17E-119	PREDICTED: peroxisomal membrane protein PMP22-like [Cicer arietinum]
Swissprot	tr\|Q9ZS51\|PMP22_ARATH	1.00E-77	Peroxisomal membrane protein PMP22
trEMBL	tr\|I1NI68\|I1NI68_SOYBN	1.00E-117	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA20G34920.1}

Sequence

Transcript Sequence

>Glyur000046s00004808.1
GTTTTTTGGCTACTTTGCCACAATTTCCATGTTCCCCCATTCACATGCCATTACCATAAACAAATGCCACTCCATCGGGAAGAAAAGATCCCTTCATTTTTACACATTGAAATGTTTTATGGAGACACCAATTGCTAAAGAATTTCAATTTCTGGTGAAACACATTAACGTTGATTTGGTGAATCGTGATTCACGTCCAGTCCCGGAGCCAAACACTTTTTTTGTTGTTGCCACCTAACCGTTCCTTGTATTCTAGTACTTCGCCTACCATTTCTATTGCACGTTTTGTCTCTCATATATTATTTCCTAAGTTTCTGTCACTCTCACTCGGTTCTATTATAATAACCAACAGAAACTACAATCTCGGAGACAGAGACGATCCGGGGTTGATCGACCACCATGTCTGAAATAGTCAACGATGCTTGGAAGAAATACCTCCTGCAGCTTCAGCTTCATCCTCTCAGAACCAAGGCAATTACTGCAGCGGTTCTAGCTGGTTTTAGTGATGCAGTGGCACAGAAGATTGCTGGGGCCAAGAAGCTTCAGTTGAGAAGGTTGCTTCTTTTCATGCTCTATGGTTTCGCCTACTCAGGACCCTTTGGACATTTTCTCCATAAATTGATGGATAAAATTTTTAAGGGGAAGAAAGACAATGAAACTGTTGCTAAGAAGGTGATCCTTGAACAGATAACTAGTTCCCCATGGAACAACTTTTTCTTCATGATGTATTATGGCTTGGTTATAGAAGGAAGACCTTGGAGTACAGTCATGAGCAAAGTTCAAAGGGACTACCCTTCTGTCCAGTTGACTGCATGGAAGTTTTGGCCTATCGTTGGTTGGGTGAATTACCAGTATATGCCTTTGCAGTTCCGTGTTATATTTCACAGTTTTGTTGCTTCATGCTGGGGAATCTTTCTGAATCTGAAAGCAAGGTCTGTTGCTATCAAGAAGGATTAGGACAGAACAGGGTCTTTTTCACACTGGGTGATTTTCTGTGTCCTTCCTATTTGAACTGGGATGGGAAATCTCCCATTTTTTGACTATTCTTACTTCTCATTTTTCCATTTGTTTTCATTCTGCACTTGCCAATACTGTTTGTGTGGGCAGATAGAATCATAAATTACACTAGTCAAAGGTGAATTTAGTCCTTGAAAACAACCGAGTTCAAACTTCAATGGCTTTTCCTCATGTCAGTGGTGCAGTGGGGAAAATCTTCTTGTTCTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00046	159026	163301	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0016021 integral component of membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000046s00004808.1	PF04117.7	Mpv17_PMP22	114	178	6.00E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.424
SRR1783600	control	7.296
SRR1783602	moderate drought stress	4.618
SRR1811619	moderate drought stress	4.484

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.472
DRR006520	Root Summer glycyrrhizin high producing strain	11.962
DRR006521	Root Winter glycyrrhizin high producing strain	4.297
DRR006522	Root Winter glycyrrhizin high producing strain	4.313
DRR006523	Root Summer glycyrrhizin low producing strain	6.017
DRR006524	Root Summer glycyrrhizin low producing strain	5.904
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.033
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.092

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	61.214
SRR2868004	Drought Stress (root)	65.035
SRR2967015	Control (root)	44.488

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	17.656
SRR9715740	Leaf	6.799
SRR9715741	Leaf	21.973
SRR9715739	Root	6.907
SRR9715742	Root	15.698
SRR9715743	Root	12.776

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.631
SRR8749028	MeJA induced 9h	2.832
SRR8749029	MeJA induced 9h	2.957
SRR8749030	Uninduced	3.530
SRR8749031	Uninduced	1.457
SRR8749032	Uninduced	1.583

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	26.489
SRR8400027	Control - Root	18.086