Gene detail information of Glyur000046s00004805 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G28600.1 | 0 | no pollen germination related 2 |
| NR | XP_006589284.1 | 0 | PREDICTED: tetratricopeptide repeat protein 7A-like isoform X1 [Glycine max] |
| COG | YP_003482844.1 | 4.00E-10 | TPR repeat-containing protein [Aciduliprofundum boonei T469] |
| trEMBL | tr|K7LK66|K7LK66_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA10G32710.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00046 | 142533 | 146433 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000046s00004805.1 | PF13414.1 | TPR_11 | 588 | 652 | 2.70E-07 |
| Glyur000046s00004805.2 | PF13414.1 | TPR_11 | 607 | 671 | 2.80E-07 |
| Glyur000046s00004805.3 | PF13414.1 | TPR_11 | 588 | 652 | 2.70E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.445 |
| SRR1783600 | control | 3.206 |
| SRR1783602 | moderate drought stress | 4.789 |
| SRR1811619 | moderate drought stress | 4.824 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 13.125 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 13.129 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.623 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.596 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.379 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.437 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.070 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.080 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.806 |
| SRR2868004 | Drought Stress (root) | 11.849 |
| SRR2967015 | Control (root) | 13.005 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.737 |
| SRR9715740 | Leaf | 2.543 |
| SRR9715741 | Leaf | 3.618 |
| SRR9715739 | Root | 1.506 |
| SRR9715742 | Root | 9.385 |
| SRR9715743 | Root | 7.078 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.359 |
| SRR8749028 | MeJA induced 9h | 7.539 |
| SRR8749029 | MeJA induced 9h | 3.973 |
| SRR8749030 | Uninduced | 3.772 |
| SRR8749031 | Uninduced | 0.620 |
| SRR8749032 | Uninduced | 0.628 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 16.755 |
| SRR8400027 | Control - Root | 17.142 |