Gene detail

Gene detail information of Glyur000046s00004803

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G46050.1	2.00E-123	peptide transporter 3
NR	XP_004495348.1	0	PREDICTED: peptide transporter PTR3-A-like [Cicer arietinum]
COG	YP_678209.1	2.00E-16	oligopeptide transporter [Cytophaga hutchinsonii ATCC 33406]
Swissprot	tr\|Q9FNL7\|PTR3_ARATH	1.00E-150	Protein NRT1/ PTR FAMILY 5.2
trEMBL	tr\|I1NI63\|I1NI63_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA20G34870.1}

Sequence

Transcript Sequence

>Glyur000046s00004803.1
AGGTGAAGTCTATAAATGCTGTGTAGTTTCGCCAAACGAGAGAGCATAGTAATTAGTAACGGATGGACTCATAGAGTTACTCACTCTCACTCCCATCTGCGACCCAGATAAACCTTCCTTGCATACTCCTCGTTCCCGTCGAAGGGACCAAACAAAGAGCAAAGGGAATGAAAAAATAAACAAAAAAAACAGAGGAAAAACGAGAGAGTGTGTGTGAGGGCGAGATTTCTGGTGTTGAGTAAATTAACAAAAGATAGATAAATATGACNATGGAAGAGGGCAGGGTCGTGAATGTGGAGGAGTACACACAAGATGGAACTGTGAATCTTAAAGGGAAACCTGTTCTTAGATCCAAAAGTGGTGGTTGGAAAGCTTGCTCCTTTGTCGTTGTGTATGAGATATTCGAAAGAATGGCTTACTATGGAATATCATCAAATTTGATCCTGTATCTGACAAAGAAGTTACACCAAGGCACGGTGACTGCTTCAAACAATGTCACCAATTGGGTTGGGACCATTTGGATCACACCCATATTAGGCGCTTACGTTGCTGACGCTCACCTGGGCCGCTATTGGACTTTTGTCATTGCCTCCACCATTTACCTCTCCGGTATGTCTCTGCTTACACTAGCAGTGTCCCTTCCTAGCCTAAAGCCACCTCCATGCTTTGAAACGGATGTGACAAAATGCAAGAAAGCCTCCACATTACAGTTAGCTGTGTTCTATGGTGCACTTTACACTCTAGCTGTAGGAACAGGTGGAACCAAGCCCAACATCTCCACCATTGGAGCTGACCAATTTGATGATTTTCACCCTAAAGAAAAGTTACATAAGCTCTCCTTCTTCAATTGGTGGATGTTCAGTATCTTCTTTGGGACCCTCTTTGCAAACACTGTTCTAGTGTATATCCAAGATAATGTGGGTTGGACTCTTGGTTATGCTCTTCCAACTCTAGGGCTTGCAGTATCAATCATGATATTCTTGGCAGGAACACCCTTCTATAGGCACAAATTGCCTGCAGGGAGTACCTTCACTAGAATGGCCAGGGTCATTGTGGCTGCTTTAAGGAAATGGAAAGTGCCTGTTCCCCGTGACCCTAAAGAACTATATGAGCTTGATATGGAAGAATGGCCAAAGAACTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00046	125093	131822	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006810 transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0005215 transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000046s00004803.1	PF00854.16	PTR2	103	285	1.40E-49

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.944
SRR1783600	control	2.938
SRR1783602	moderate drought stress	1.683
SRR1811619	moderate drought stress	1.644

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.189
DRR006520	Root Summer glycyrrhizin high producing strain	0.186
DRR006521	Root Winter glycyrrhizin high producing strain	2.411
DRR006522	Root Winter glycyrrhizin high producing strain	2.739
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	28.705
DRR006526	Leaf Summer glycyrrhizin high producing strain	28.511

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	22.624
SRR2868004	Drought Stress (root)	33.614
SRR2967015	Control (root)	26.543

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	106.743
SRR9715740	Leaf	167.913
SRR9715741	Leaf	216.754
SRR9715739	Root	0.261
SRR9715742	Root	0.578
SRR9715743	Root	0.587

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.942
SRR8749028	MeJA induced 9h	4.274
SRR8749029	MeJA induced 9h	1.000
SRR8749030	Uninduced	1.786
SRR8749031	Uninduced	0.139
SRR8749032	Uninduced	0.849

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.683
SRR8400027	Control - Root	5.217