Gene detail

Gene detail information of Glyur000046s00004797

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G23100.2	3.00E-69	homolog of human DNA ligase iv-binding protein XRCC4
NR	XP_004495346.1	4.10E-140	PREDICTED: DNA repair protein XRCC4-like [Cicer arietinum]
Swissprot	tr\|Q682V0\|XRCC4_ARATH	3.00E-89	DNA repair protein XRCC4
trEMBL	tr\|G7I3Z1\|G7I3Z1_MEDTR	2.00E-139	DNA-repair protein XRCC4, putative {ECO:0000313\|EMBL:AES61045.1}

Sequence

Transcript Sequence

>Glyur000046s00004797.1
CGCCCAAATCTCTTAGGGACCAAAATGACTTTTCACTCTATAATTGAGTTTGAGTGCCGAATAATCGGCATATGCACAGCATAGGCATAGAAGAGTTGTTCCTTCTTGTGCAGATTGATGATGGAGGAGACAAAGAGGCACACGTGCATGAAGCTACAGATTCGAAATTGTACTACCAGTGGAGAAGCCATATTCGTGAAGGGCACTTGGTTTGACACCCACTTCGACCTCGCCATCACCGATGGCCACACTGCCTGGTACTGCCACGTATCGGAGGAGGAGGTGAAGGAGCGTGCTGCTCAGTGGGACCAGCCAGTTTCGGAGTACTTGCAGTTGGCTGAGCGCTATTTGGGGTTTCAGCAACCCGATTCTCTCTATTCATTTACGGACGACGGTGATAGTGGCCATAAGAGGTTGTTGTGGGCGTTTCAGAAGGAAGGAATGACGCTGAATTGCAGATGGAAACTCATGCGGTCTCCTGATTGTAAGAAAACTACTGCAGAAATATTGGACTTTCTCTTGGACTCAAACATAAGGCTTAGTGAAGAAGTTGTTAGAAAAACTGAATTGTATGAGAAGATGAAAGTGGAAGCTGAGAAGTGCTTAGCCCAGAGTGAAAGAATCGCCAATGAGAGGGTGGAATTTGAATCTGAAACCTATGCAAAGTTTCTAGGGGTCTTAAATTCCAAGAAATCAAAGCTAAGAGAGCTTCGAGATCAGCTTTCAAAACAGGAGAATGCTAAGAAATCTCCTCAAGAGGAAGAAGACTCGGAAAAAACTGAGAGCTTCGACGAAGAAAGTGATTATGACAAAAGCGATGAAGATCCTCAAATGGGTATTACTAGTTCTTCAAAGGATGTTAGAGCAAACAAGCCTTCTCGTCCAAGGAGAAGTAGGCACACATGACACACATGTGCCCCTTGTTATCCATGCCTCATCATAGCTTCTCACAGTAGAACTAATGGTTTCAATCTTGAACTCCTTATAAAAAGCCAATAGTGTTACAATCAATCGTGGTAATTCATACTTGACATTGTACATTGCAAATCTAATAACAATGTAGGTAGATGCATGTGCATCTATACTTTAGGAATGAGTTGAGATTTATTTTTATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00046	106887	110417	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006302 double-strand break repair

GO:0006310 DNA recombination

cellular_component
GO:0005634 nucleus

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000046s00004797.1	PF06632.7	XRCC4	33	241	2.00E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.742
SRR1783600	control	2.773
SRR1783602	moderate drought stress	2.230
SRR1811619	moderate drought stress	2.245

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.868
DRR006520	Root Summer glycyrrhizin high producing strain	5.960
DRR006521	Root Winter glycyrrhizin high producing strain	5.423
DRR006522	Root Winter glycyrrhizin high producing strain	5.173
DRR006523	Root Summer glycyrrhizin low producing strain	7.872
DRR006524	Root Summer glycyrrhizin low producing strain	7.924
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.938
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.731

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	12.965
SRR2868004	Drought Stress (root)	12.220
SRR2967015	Control (root)	13.710

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.624
SRR9715740	Leaf	6.737
SRR9715741	Leaf	6.894
SRR9715739	Root	1.564
SRR9715742	Root	3.673
SRR9715743	Root	2.579

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	10.825
SRR8749028	MeJA induced 9h	4.323
SRR8749029	MeJA induced 9h	6.269
SRR8749030	Uninduced	2.592
SRR8749031	Uninduced	1.715
SRR8749032	Uninduced	2.830

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.177
SRR8400027	Control - Root	12.394