Gene detail information of Glyur000046s00004795 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G23090.1 | 8.00E-44 | TPX2 (targeting protein for Xklp2) protein family |
| NR | XP_006588461.1 | 0 | PREDICTED: uncharacterized protein LOC100798109 isoform X1 [Glycine max] |
| Swissprot | tr|Q8GYX9|WDL1_ARATH | 5.00E-49 | Protein WVD2-like 1 |
| trEMBL | tr|K7LK74|K7LK74_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA10G32860.5} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00046 | 93839 | 97444 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000046s00004795.1 | PF06886.6 | TPX2 | 259 | 315 | 6.70E-23 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 11.324 |
| SRR1783600 | control | 11.326 |
| SRR1783602 | moderate drought stress | 9.344 |
| SRR1811619 | moderate drought stress | 9.178 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.913 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.636 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.897 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.866 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.053 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.986 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.743 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.765 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 26.560 |
| SRR2868004 | Drought Stress (root) | 17.442 |
| SRR2967015 | Control (root) | 16.352 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 12.474 |
| SRR9715740 | Leaf | 2.289 |
| SRR9715741 | Leaf | 5.730 |
| SRR9715739 | Root | 1.120 |
| SRR9715742 | Root | 12.746 |
| SRR9715743 | Root | 12.310 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 13.661 |
| SRR8749028 | MeJA induced 9h | 7.024 |
| SRR8749029 | MeJA induced 9h | 9.297 |
| SRR8749030 | Uninduced | 7.122 |
| SRR8749031 | Uninduced | 2.610 |
| SRR8749032 | Uninduced | 4.310 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 35.120 |
| SRR8400027 | Control - Root | 37.363 |