Gene detail

Gene detail information of Glyur000046s00004792

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G30630.2	8.00E-134	P-loop containing nucleoside triphosphate hydrolases superfamily protein
NR	XP_003556363.1	0	PREDICTED: uncharacterized protein LOC100796923 [Glycine max]
Swissprot	tr\|Q40468\|IF415_TOBAC	7.00E-10	Eukaryotic initiation factor 4A-15
trEMBL	tr\|I1NI49\|I1NI49_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA20G34750.2}

Sequence

Transcript Sequence

>Glyur000046s00004792.1
CAATAATCCAATCCTATAATAACGAACGAGATGTGGATGTAAATAATATAATTTAGTCTGTGCTCTCCCGTTGACCAGCTAAGGCCTCACCAGTCACCACCACTGCATCATCTGTGATCCTGAATCNCCAACAACATAAGATGCATCTGCAGCAAGATGGTTCTGTTGGTAAAGTTATTAGCTTCACGCATGTTCTGGCTGCCTCCGTCGCCGGTTTAATTGGCGACAAGTCAAGGGTGGTGGTGAGAGACCAGAAGATCATTCCCCTCCTAGAGAGAACAGAATCTGGTCGTGTTGCAAAGCTCGAAAAATTCTCCCACTATGTGGATATCAAATATCTACTCAGACAGCGATCGGGACTCCCACAACAAGAGAGTTCATCAGCGAATACACTGGGTTTCACTCAAGTTGTGAAACGGGAAGGGTTTCATGGAATTGCTAGCGCATCACAGCACTCTATCGTTTGTACCCAAAATGTTCCATGCCCAAATCGAGCTTACAGTTCAACAAGGTTTACGGTACTTGATTTCACCCAAACGCAACCCCACAACGTTTCGAACCTTCTGGACGTCGTTCCAACAGAGATCGGCGAAGCCACAACGGTTGAAACGCCGCCATCGCACAAGCTCCTCATCGAAGGGGGAAATTTTGCCGCCGTTACCGATTCAACCTCAGTGGTCGCTGACCAACGAGAGGAGACGGACCCTGAAGTCTTCAAGGATCCAACTCCACCACTGGCCCCTATGAATCCACCGGCACCGGACACGCTAACGGAGAAGGTTGGGTCATCGAAAGAGAAGCAATCTGAGTGGCTTACTGCTCCCTTGAATCCTGATACACCGAACACCACTCTTCCTGAGTTCACGAAGCCTAAGACTTCCCCAGAAATCTCCACGAATCCAATTCCACCATTATTCCCTCTGAATCCTTCGGCATCAATCACCACTGTGCCATCTCCAACTGTGGATTTGGATTCTGATACCGTCGACTCTGGTTTTGATCCCTCCGAGGCTCCGCACAACGACACCACCACCTATTCGCCCTGTGTCTTGCGACCATCGCCAGTTTCGGGTACCATCTGTCCTCCCTATTTTTTGCAAACACCGCCAACCACCTGGTCTCCATTTAAGTTGCATGAGCGCCACTTTTTTCTTCTCCGTGTTGCTGCCTCTACCCCCGACGAGGACATGTTGATCGTTGACACCGGTCCTTATGACCCAGGCCCACTCAAACCACCATCCCCAACCATGGAGGCGACTCCACGGAGGTATATTTCAGTTCAAATTTTTCCCGTTTCTGGTTTTCTATGCACTCGCAGAAGGAATCTGGTGCCTAAGTTCGAAGTTGATGAAATGTTAGTGGAAATTAAAATTCGGCAATATAGCTTTCCTGAACCAAAGGATTTTCAAAAATGGGAATCACGTGATACCATTAATGGCTGGCTATTGGTTTCAAAGAGGTCTAAAATTGCTACCTCTAATGTTTTCGCATGGGATTCTGTTGATATTTGTGCTTTTAAAAATGTTGTAATCCTAGACATGTTTGCAAATTGTGGCATAGCCATCGGTGATTTGGTTTATGAACCTCCAATTGATGGTCCAATATTATGGGAAATTGGAATCCTTGATCCTCCTTTTGTTGTGTTCGTTGTTCCTGATCAAAAACCCAATTATATCAGCTACCTCTATGTTATTCATCCTGCCATGTTTACGCATTATGGGTTTTGGGAGAAACATGTCAAGCACATTGTTGAAGACATTCCATATGTCCCTGAGATTTTGCTTGATGTGTTGGATCATGTCATTGCATTAGCCCAACTTCTAGTATCTGGAAAATGTATTTTGAAGGACTTGGATGATAGTAGCTTTGAGGGAAATTTGTGGCAAAGTTATCTGCTGTCAACTAATAGATTGCTTATATTGCAAAGTTATCTGCAAGTTGGCAACCTTCATGAGATTGCAAGGGGGCCAGCACGAGGCATTGAAACCTTCAGTGATTATCCTTCCATTTTAAAGAAGCTTCAAAATATAATTTCAATAATTTGGGCTGATTATTGCAGACTTATAAGGGCAAGTTTGGATTCAGGAAAGTACCCATCTGATGCTGGGCAATATGATTTTAAGTTGAAGGCATTAATTCCGATTGATGGACAAGTAATTGTCATCCCTTATGATGAAGCCTGGGATGTTTTTGTTGCAAGGAAATTACCAGAAAAATTTTGGGGCAACATATATGCTTATAGTTTTGAGAAGCCTTTTGTACTACAGCAAAAGGGAACTGTCTTAGTTTCTCTTTTTGCCCAAATCATTTACATGCTTGCTAGTGAAACAGCAGAGATACAAGCTTCAATGTTGGCTGTTTTCTTGGATGAACCTTCAGCTACACCTTATCCAGGACACATTGATGATGCAGTCTTGGATATTCAAGGATACATGTTCCAGGTATTGAGTACTGAGCCTCAGCAGAAAATAAAGCTCAAAAATATTCTTTTGGAAGCTACAAGGGAACAGAGGTTTGAGAGAGTAACCAAGAAGCTGAAGGTGGCAAGAGTGTTCTATACGTTGGTAGAAGAGATGAAAGCAATAAAGGGTGATTCTCATAAAAACCGTGACGTCACAGTTCCCATTACCCACGGTGAGAGGAGTCCAATGTTGCTACTTATGGGTGGTGGCATGGGTGCTGGAAAAAGCACTGTTCTTAAAGACATTCTTAAAGAATCATTTTGGGCAGATGCAGCTTCAAATGCTGTAGTCGTTGAAGCAGATGCTTTTAAGGAAACTGATGTCATATACAGAGCTCTTAGCTCTAGGGGTCACCATGATGACATGCTCCAAACTGCTGAACTGGTGCATCAATCTTCCACTGATGCTGCATCTTCGCTGCTAGTGACAGCTCTAAATGAGGGGAGAGATGTGATCATGGATGGTACCTTGTCATGGGAACCTTTTGTGGAGCAGACTATTGCTATGGCAAGAAATGTTCACAAATATAGGTACCGAATGGGGGAAGGGTATAAAGTAGCTCNAGATGGGACAATTACTGAAAATTACTGGGAGCAAGTAAATGTGGCAGAAGAAGAACATCAAGTAGAGGAAAATTGGAAAGGGAAACCACACACTAGAAAGCCTTACAAAATTGAGCTAGTTGGTGTGGTTTGTGATGGCTATCTTGCTGTTATTAGGGGNATTAGGAGAGCTATTATGACTGGGAGGGCAGTGAGGGTTAATTCACAATTGAAATCCCANAAAAGATTTGCTAATGCATTTCCAAGATACTGCAAACTTGTTGACAATGCCAGGCTCTANTGCACAAATGCTATTGATGGTCCACCAAAGCTCATATGGTGGAAGAATGATGGTCACAATCTATCAGTGGATCCTGAAGTTATCAAATGCTTGAAAATGATAGCCAGTGTGAATGCTGAAGCTAATTCCATCTATGAACTTTATGAGGAANCCAGCCCTCTTATGGGACCTGGTTCTGTTTGGAATGACATTGTTCTTTTACCTTCAAGGTCCAATTATCAGAAAGAGTTAAGGGAATCCATTCAGAAAATAGAAAAATTCATCAGAAAACAGTAACCAGTGTATTCCTTGCAAAACCAAGTTTTGGAGTATCTAACAACGTTTTTGAGTTATCAAACCTTTTGTTCATCTGCTATTCCTGTGGTTTAACAAGAAAAGAAAGCATATGCAGGAGAAGGAAGAGAACAGCAATGAAGTCATTTT

Protein Sequence

>Glyur000046s00004792.1
MHLQQDGSVGKVISFTHVLAASVAGLIGDKSRVVVRDQKIIPLLERTESGRVAKLEKFSHYVDIKYLLRQRSGLPQQESSSANTLGFTQVVKREGFHGIASASQHSIVCTQNVPCPNRAYSSTRFTVLDFTQTQPHNVSNLLDVVPTEIGEATTVETPPSHKLLIEGGNFAAVTDSTSVVADQREETDPEVFKDPTPPLAPMNPPAPDTLTEKVGSSKEKQSEWLTAPLNPDTPNTTLPEFTKPKTSPEISTNPIPPLFPLNPSASITTVPSPTVDLDSDTVDSGFDPSEAPHNDTTTYSPCVLRPSPVSGTICPPYFLQTPPTTWSPFKLHERHFFLLRVAASTPDEDMLIVDTGPYDPGPLKPPSPTMEATPRRYISVQIFPVSGFLCTRRRNLVPKFEVDEMLVEIKIRQYSFPEPKDFQKWESRDTINGWLLVSKRSKIATSNVFAWDSVDICAFKNVVILDMFANCGIAIGDLVYEPPIDGPILWEIGILDPPFVVFVVPDQKPNYISYLYVIHPAMFTHYGFWEKHVKHIVEDIPYVPEILLDVLDHVIALAQLLVSGKCILKDLDDSSFEGNLWQSYLLSTNRLLILQSYLQVGNLHEIARGPARGIETFSDYPSILKKLQNIISIIWADYCRLIRASLDSGKYPSDAGQYDFKLKALIPIDGQVIVIPYDEAWDVFVARKLPEKFWGNIYAYSFEKPFVLQQKGTVLVSLFAQIIYMLASETAEIQASMLAVFLDEPSATPYPGHIDDAVLDIQGYMFQVLSTEPQQKIKLKNILLEATREQRFERVTKKLKVARVFYTLVEEMKAIKGDSHKNRDVTVPITHGERSPMLLLMGGGMGAGKSTVLKDILKESFWADAASNAVVVEADAFKETDVIYRALSSRGHHDDMLQTAELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWEPFVEQTIAMARNVHKYRYRMGEGYKVAXDGTITENYWEQVNVAEEEHQVEENWKGKPHTRKPYKIELVGVVCDGYLAVIRGIRRAIMTGRAVRVNSQLKSXKRFANAFPRYCKLVDNARLXCTNAIDGPPKLIWWKNDGHNLSVDPEVIKCLKMIASVNAEANSIYELYEEXSPLMGPGSVWNDIVLLPSRSNYQKELRESIQKIEKFIRKQ

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00046	66419	74545	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005524 ATP binding

GO:0016301 kinase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000046s00004792.1	PF06414.7	Zeta_toxin	832	946	5.00E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.012
SRR1783600	control	10.903
SRR1783602	moderate drought stress	15.851
SRR1811619	moderate drought stress	15.809

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.195
DRR006520	Root Summer glycyrrhizin high producing strain	12.072
DRR006521	Root Winter glycyrrhizin high producing strain	5.613
DRR006522	Root Winter glycyrrhizin high producing strain	5.800
DRR006523	Root Summer glycyrrhizin low producing strain	6.390
DRR006524	Root Summer glycyrrhizin low producing strain	6.703
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.189
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.233

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.690
SRR2868004	Drought Stress (root)	12.913
SRR2967015	Control (root)	15.110

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.760
SRR9715740	Leaf	17.544
SRR9715741	Leaf	19.666
SRR9715739	Root	3.792
SRR9715742	Root	14.317
SRR9715743	Root	11.814

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.439
SRR8749028	MeJA induced 9h	3.772
SRR8749029	MeJA induced 9h	1.207
SRR8749030	Uninduced	2.013
SRR8749031	Uninduced	1.431
SRR8749032	Uninduced	1.235

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.738
SRR8400027	Control - Root	11.466