Gene detail

Gene detail information of Glyur000046s00004791

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G06750.1	8.00E-114	P-loop containing nucleoside triphosphate hydrolases superfamily protein
NR	KEH42748.1	0	P-loop nucleoside triphosphate hydrolase superfamily protein [Medicago truncatula]
trEMBL	tr\|A0A072VMT4\|A0A072VMT4_MEDTR	0	P-loop nucleoside triphosphate hydrolase superfamily protein {ECO:0000313\|EMBL:KEH42748.1}

Sequence

Transcript Sequence

>Glyur000046s00004791.1
CATTGAGGGAATATTTAATGAGTGGTGGTGGTGAGTTGTTTGGTTACGACACTTGAGAGAGGAAATTAAAAATAATTATCAGGTTATCTTGACACAGTTGCTGCTGTACTATAGCTAGCCAATTTTGTGATTGTGAATCTCCAACAAGATGCAGCAAGATGGTTCTGTTGGAAAAGTCATCGGCCTCACGCATGTTCTGGCTGCCTCCTTCGCCGGTTTAATTGCCGCCGCCGCCGCCTCGCGTTACCGGCGGCCACCTTCCACGGTGGTTATAGACCAGAAGATCGTTCCCCACCTTGACAAAACAACAGGATCTGGCCATGTTGGAAAGATCGAAAGGTTCTCCCACTATGTTGCTAGGCAAATAGGATTTGAAGATGTTAGCGAGGTCCCGGAGCTATGTGTATTGGCCCACGAATATCTGAGAAAATCTAAAGGGTGCGACCAAAGCATCTATGAATACCTTGCCAATGAAAAAGACGCCGATTCTCTCTATGTTAAATTGATCGATGAGTTTGAGAGATGCGTCCTCAGTTATTTCGCATTTCACTGGATCCAAGCTCCATCTGTGGTTAGTCAGGTATTGAGTNTTGAGTCTCAGCAGAAAACAAAGCTGAAGGAAATTTTATTGGCAGCTACAAGGAAACAGAGGTTTGAGAGAATAACCAAGGATCTGAAAGTGACNAGAGTGTTCTCTACTTTGGTGGAAGAGTTGAAAGTAATCAATGGTGACTCACAATCTAAAGATGTCATGGTCCCCATGGCCCACAGTGAGAGGAGTCCAGTGCTGCTGCTAATGGGTGGTGGCATGGGAGCTGGAAAGAGCACTGTTCTTAAAGACATTCTCAAAGAATCATTTTGGGCAGGAGCAGCTTCAAATGCTGTGGTTGTTGAGGCAGATGCTTTTAAGGAGANTGATGTCATATATAGAGCCCTTAGCTCTAGGGGTCACCATGATGACATGCTCCAAACAGCTGAATTGGTGCATCAATCTTCCACTGATGCTGCATCATCTCTGCTAGTGACGGCTTTAAATGAAGGGAGAGATGTGATCATGGATGGCACCTTGTCATGGGAACCTTTTGTGGAGCAGACTATTGCCATGGCAAGAAATGTTCACAAACATAGGTACCGGATGGGGGTAGGGTATAAGGTAGCTGAAGATGGGACAATTACTGAAAATTATTGGGAGCAAGTAAATGAGGCAGAAGAACAACATCAACCAGAGGAACCACACAATAGGAAGCCTTATAGAATTGAGCTAGTTGGTGTGGAGAGCTATTATGACAGGGAGGGCAGTGAGGGTGAATTCACAATTGAAATCCCACAAAAGATTTGCAAACGCATTTCCAAGATACTGCAAACTTGTTGACAATGCCAGNCTNTANTGCACAAATNCTATTGGGGGTCCACCAAAGCTTATTGGGTGGAAGGATGGTGATCACAGTCTACTAGTGGATCCTGAAGACATCAAATGCTTGAAAATGATAGGCAGTTTGAATGCTGAAGCTGATTCCATCTACGAACTTCACATGGAACCCAGCCCAATAATGGAACCTGGTTCTGTCTGGAATGACTTTGTTCTATCATCTTCAAGGTCAAGCGTTCAAGAAGAGTTAAGGGAATCCATTCTTAAAATAGAGAAGTCCATCAGAAAAATGTAACCAATAATGTTGCAGCCAAAACCAATTGCTATACTGTCTTACGATGTATATGGTTTTCAATAATTTTATGTATTTTAATTCCTATGATTTAATTAATTTCGGTGTAGTTGTTTTCTAGGTATAAATATGTTCTGATGCAGAAATCAATATCTCATTTTTTTTGGGTCACAAATTCACAATGCAGAAATCAAGAACTGAAGATTGTATTTGGATGTAGGTAAGTTGGGTCTTGAATCTCTTGATGATGGTTCATGTTACACTTTAGTGCCCATGTAAGCAAAGAGTATACATGTATAGAGTAAAGATTAAGTCAGATGAAGTGATGATACATGGGAGGTGTGCCCCCTTATATGTTAATATTGTGTCACAGTAAAGATCCTCTAAGTAAATGAGTAAAGAAAGAAAATGGTATCTCCCATTGAATAAAGAAAGTTGTATTTCCATGTAAATCTGAAAGGTAGCAATGCAAATACATTCGGTAGGAATTGAGGTGGATTCACTTTGAGGCATCCANGATCCACATGGACCTTCTTAGGTCAACATAGTTGAATTTGAAATGCTTTCTAATCTCAATACCTCTGTCAAGTTCATTTTGCATAGTGTTAGTGCTCTTCAAAAAGATGGAAGGTGATGCTTCTCGGAATGTCTGTTACCTTGAGGTGGGGGAACTATTTAGTTCTCTCTTGACTTTGTTTCTGTGATGGCGACTATCTTGAGAAAAACATGCAATCAATGATGACGACAGTGAAAACAACTTGGAAGAATAGTTTAGGATGCTGAACTTTATTAACTGCGTTGTGGTCCTATTCCTCATCAATATATTAACATCCCCGTTAACTCCTGCTTATCAACAAATGTATTTACATACATCTTTTAATAACCGTAATACTGTCTGTATAAGCAATTAGATTCAGGATCATGTCCCAATACCATGCTCTATGACAAATCTCATTGAATTGAGCTTGAACTTCACTTCTCTGTGGTTTGTTCCGAACGAGCTTATTGCNTTCTTCCTCAATCAGCCTGTGTTACTTCCAAAGTATTGAGTGCCATTAATGATTCACATAGGCGTCAGGANTCCCCAAAATCACATGACCCCTTTGATCTTCAACTTCGTGAGGTAAATTCCTCATGTTGGAGAATAAATATTATCATCACTTTCAACCTCACTTTCATTTTCACCATAATTTTCACTATTATAGGTCTCAAGATATGCCTCATCTCCTTCCTCACCATCCTCCACCTACATATAAATAAGATATTAACACAAATATATATAAAACATAAAGCAGTGTCATAAACTATTGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGACCTCAGAGTTATCATCATTATCATCATCAGTAAGATAAGCAGAATCTAATTTGTCATACAGTGCTTCATCTCCTTCCTCCTTTACTTTCTCCATTTGTTCCTATATAAAAAGTGGTCCAAGCCAAACAAGATTATGAAACAGGGGTTTCTATACAATATACAGTTTGGCTTGCAATATGAGATGCTAAATATGTAAAAAGATCATGAAGGACATACTATTTCCGATCTTAACTTCTCCACTTTACTTTGCAAAGTTGAAATATGATCCGAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00046	54186	60865	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005524 ATP binding

GO:0016301 kinase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000046s00004791.1	PF06414.7	Zeta_toxin	207	322	1.30E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.015
SRR1783600	control	4.872
SRR1783602	moderate drought stress	5.829
SRR1811619	moderate drought stress	6.947

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.718
DRR006520	Root Summer glycyrrhizin high producing strain	5.506
DRR006521	Root Winter glycyrrhizin high producing strain	6.720
DRR006522	Root Winter glycyrrhizin high producing strain	6.448
DRR006523	Root Summer glycyrrhizin low producing strain	5.437
DRR006524	Root Summer glycyrrhizin low producing strain	5.164
DRR006525	Leaf Summer glycyrrhizin high producing strain	37.737
DRR006526	Leaf Summer glycyrrhizin high producing strain	37.577

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	42.950
SRR2868004	Drought Stress (root)	49.635
SRR2967015	Control (root)	52.094

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	44.511
SRR9715740	Leaf	42.944
SRR9715741	Leaf	41.698
SRR9715739	Root	0.704
SRR9715742	Root	3.560
SRR9715743	Root	3.667

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.530
SRR8749028	MeJA induced 9h	17.405
SRR8749029	MeJA induced 9h	14.100
SRR8749030	Uninduced	38.115
SRR8749031	Uninduced	39.715
SRR8749032	Uninduced	45.033

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	15.585
SRR8400027	Control - Root	8.818