Gene detail information of Glyur000046s00004790 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G23070.1 | 0 | CRM family member 3A |
| NR | XP_004495335.1 | 0 | PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic-like [Cicer arietinum] |
| Swissprot | tr|Q9FYT6|CRS1_MAIZE | 7.00E-128 | Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic (Precursor) |
| trEMBL | tr|K7N4Q3|K7N4Q3_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G34730.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00046 | 49132 | 56084 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000046s00004790.1 | PF01985.16 | CRS1_YhbY | 245 | 327 | 2.20E-17 |
| Glyur000046s00004790.1 | PF01985.16 | CRS1_YhbY | 454 | 534 | 1.30E-18 |
| Glyur000046s00004790.1 | PF01985.16 | CRS1_YhbY | 663 | 750 | 1.10E-21 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.270 |
| SRR1783600 | control | 8.355 |
| SRR1783602 | moderate drought stress | 11.457 |
| SRR1811619 | moderate drought stress | 11.433 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.845 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 9.694 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 11.544 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 11.204 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.885 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.860 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 20.914 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 20.477 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.930 |
| SRR2868004 | Drought Stress (root) | 11.259 |
| SRR2967015 | Control (root) | 11.576 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 18.961 |
| SRR9715740 | Leaf | 26.862 |
| SRR9715741 | Leaf | 18.687 |
| SRR9715739 | Root | 0.884 |
| SRR9715742 | Root | 5.194 |
| SRR9715743 | Root | 4.491 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.780 |
| SRR8749028 | MeJA induced 9h | 6.032 |
| SRR8749029 | MeJA induced 9h | 3.810 |
| SRR8749030 | Uninduced | 5.651 |
| SRR8749031 | Uninduced | 4.569 |
| SRR8749032 | Uninduced | 3.258 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 13.490 |
| SRR8400027 | Control - Root | 12.598 |