Gene detail

Gene detail information of Glyur000046s00004787

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G01680.1	1.00E-50
NR	XP_004491932.1	0	PREDICTED: uncharacterized protein LOC101497031 [Cicer arietinum]
trEMBL	tr\|A8C978\|A8C978_MEDTR	0	Sieve element occlusion protein {ECO:0000313\|EMBL:AES61032.1}

Sequence

Transcript Sequence

>Glyur000046s00004787.1
CACACCCATCACACACCCCATTCTCTCATTTTACTCATTGGAGTGGGGTGTCATATGGGTGTATGGGTGTCCATGTATCATTGCTCTTTATTAATTGTCTTTCACTGTTTGTGATATTCTTTCTGTTACCTCTATGCTAAAGTGCTGTCAACTGTCAAGTTTACGATCCCCTGCCTCCATTTTTTTATTAGATTATTTCTAAAAACATTGGCCTAAACTCACACGCAGTCGAGCTTATAAATAAGTTGATGCATGCATGAACCACCACACCAACCCCTCAAGGCAAGGCATCATTTGCTTTCAAAGACAAATTAACCAAAGAGGATANATACTACTCTTAGATTGATCAACATGTCCACCGCAGCTGTAGTAAGTGCAAATGGCAGTACTACTGGTCTGATCCAAAAGAGTAGTGCCACTGCCACTTCGCCGCAACAGAAAGCTTTCCTCCCAAACCCATTTGATCTCAATGACTCTCAGATCCTGGACAAAGTCTATCTCACCCACGTCAGTGACGATGAGATTTGCCACACAAAGACCCTTTTCGACCTTGTCTCCAGTGTTGTACTTCAGAGTATTTCACAGGTTCCCGTAACCAGTTTCCAACCGGAATTCCCTACACTGAAGCTGATTTCCTGTCAGATGATAACCACACGTAGTGCTGCACACTGCGTACACCAAACAACACTGTGGATTCTACAAAAGCTGAGAAGCTACTCTTGGGATGCAAAAGCAGTGATAACTCTATCTGCTTTCTCCTTGGAATATGGGAATTATCTGCTCCTTAATAGGGTCACACCAGCAGACATACTTGGAAACTCACTGAAACAACTGAACCAAGTCCAAANCAGAAAGGTCCCTGCTGATATNACCGAATTGGTCACNTTCATAGTGCAAGTGGTGTTCCAACACATTATAGAGTTTGCNGCATGGTCTGATGAAGGTTATGACCCAGAGGATGTGCCTGACCTCACAGAAGCCTTGCAAGAGATCCCTGTTGTTGTATACTGGACCATTGCTGCAGTTGTTGCTGCTACTGGCAACCTTGTCGGTGTATCGGACTATGACTTATCAGATTATAGAGATAGGCTTTCTGGTGTTGTTCAGAAGTTGGCTGTGCATTTGAGAATTTGCAAAGTGCAAATAGGCAACGTGGANGATTACTTGAACCGCAGGAAAATCTTTGACAAGCCTAAAGATATTGTAGATTGTTTGAAGGCTCTGATCCACCCAAATGGAACTGTTGCGAGTCCCCAGATATATGAAGGCAACGTCCACATTAAAACGGGTCTTGAATTCTTCAGGCATAAACATGTGTTACTGTTCATTTCGGGCCTCGACAGCATTGGGGATGAGATTTTGCTTCTGAATTCAATCCATGACAGATTGCAAGACAACTCAAATATCGAAGCAACAAAGGAGAAAGATGATTTCAAGATCTTGTGGATCCCCATTGTGGACAGTTGGGACGCTGGCCGTAAGGAACAATTCAAAGCCTTGAAGAGTGGCATCAAATGGTACTTAGTCGAGTACTTCTCTGAGTTACCAGGCCGCAGGATAATAACAGATCCAGAAAGATTAAGTTACGTGGGTAATCCTATTATCCCAGTGTTCAACCCTCAAGGGATCATAACAAATCAAAATGCCATGGACTTGATTTTCCAATGGGGGATAGACGCTTTCCCTTTCAGGGAAAGTGATGGTATTGCTCTTAATCTAAAGTACGTAACACAGATTTCTTTCAAACCAGACTTCCCTGACCTGAAGCGGATTTCTTGTCAGATGATAACCACACGTGGCACTGCACAATGTGCACACCAGACAACAATGTGGATTCTTCAACGCCTGAGATGCTACTCCTGGGATGCAAAAGCACTGATAACTCTGGCCGCTTTCTCTTTGGAATATGGGGAGTTTTTGCACCTTCGTCGGGTCACAACAGCAGACCAACTTGNNAGCTCNTTGAAGCAACTNAACCAAGTCCAAAGCAGAAAGGTCCCTGCTGACATCACCGATGTAGTCACGTTCTTAGTGGAGGTGTTCCAGCACATCGTACAGTGGGAAACATGGTCTGCTATGGGTTACGACACAGAGGAAGTGCATTCCCTTTCAGATGCCATGCAAGAGATCCCTCTTGTTGTGTACTGGGCTGTTGCTACCATTGTTGCTTCTACTGCCAGCCTNGTCGGTATATCATCGGACTATAAGTTATCAAAATTTAAAGACAGGCTTTCTGTTGTTGTTATCAACTTGAAGGATCATCTGGAAAAATGCAAAGTGCAAATTGAGAGGATAGACGATTACCAAAGGCGTTTGAAAGACTCTAAAAACATCAAAGATGTTGTGGGTTTTCTGAGGCTTCTGATCCATGGCAATGGATCATCTCAGACACCCCAATTATATGAAGGCAANATCCTAGTTAAAACGGGTATTGAAGTCTTCAAGCAGAAACATGTGTTGCTGTTCATTTCGGGCCTTCACAGCATTGAGGATGAGATTTTGCTTTTAAATTCAATCTATAAAAGACTGCAAGAAAATCCAAAAGTAATTATAAAAGGTTTCAAGAAAGAGGACTTCAAGATTTTGTGGATTCCCATTGTGGATATCTGGGGCGACGTCCTGAAGCAACAGTTCAAGACCTTGAAGGAAAGAATGAAATGGTACGTGTTGGAGTACTTCTCGGAGTTACCAGGCCTTGGGATAGTAAAGCAAAAACTGAAATATCTCGACAACAAGCCTGTTGTGTCGGTGATCAACCCTCAAGGTGAGATCATCAATGACAATGCAATGGACATTATCTTCCAATGGGGGATCGAAGCTTTTCCTTTTAGGAAAAGTGATGGTGAAGATATCGCTAAAAAATGGTCTTGGTTTTGGAAGTTAATGGAGAAAGTAGATCTCGACATAGAGGACATAGAGAAGGACAATACTAGTTATATCTTCATCTATGGAGGTAACGACAGTAAGTGGATCCAAGACTTCACGATGGCAATTGGGAAAATCAAAAGACGTCAGAATATCAAGGATGTGGATGTTACCATTGAGCACCACCAGCTGGGGAAGGATGACCCCACAAGGATTCCTTACTTTTGGATTGGCATAGATGGNAGGAAGCAGAACAAGACTTGCCAGGACACAGTTGACTGCGAGATTCAAGATGCCGTGAAGAGCATGCTGTGCCTTAAACAGGACCCATTGGGATGGGTTATTCTCAGTAGAGGGCGCCACATAACGCTTCTGGGTCATGGGGAGCCTATGTATCAAACTGTGGCTGATTTTGAGATATGGAAAGACAGTGTGCATGAGAAAGAAAGCTTTGACGTTGCCTTCAAGGAATACTATGACACTAAGTTTAAAGAGATGTCTGNTCGTATTCCATGTGCTTACATCAATGTTGATAACAATACTTCANGTGTCTTGGCAACCATAACTTGCCCAAATCCCACGTGTGGGCGTGTGATGGAGGTGACATCTGTTAATTACAGGTGCTGCCATCGTGATGAACCAAACAGTTGCAAATTTGTCACCATGTCACTGTCCAATGCAGCTATACTGCCAAATCCATTTGATCTTACTGACTCTCAGATCCTTGACAAAGTTTATCTGACCCACCTCCATGATGATGACAAGTGTGACAAAGATGTCCTTTTCGACATTGTGTCCAATGTTATACTTAAGATGATTACGACGCCTGGTGGCGAGCGTTATGTGCACCAAACGACAATGTGGATTCTGCAACACCTGAGGTCCTACTCCTGGGATGCAAAAGCACTGGTGACCCTTGCTGCTTTCGCTTTGGAATATGGGAATCTTTTGTACCTCACCGCCACTTCCACATCGGATCAACTCGTGAACTCCTTGAAACAGCTGAACCAGATTCAGAACAGAAAAGCCCCCGCTACCGATCTGATGGAGCTGATAATGGAAGTGCTTCAGCACATACAGGAGTGGNCAACGTGGTCTGTTGTTGGTTATGACACCCTGGATGTTCCTTCCTTGTCTGATGCCATGCAAGACATCCCTGTTGCTGTCTACTGGATACTCGCTTCCATTGTTGCTGCCACCGGCAACCTCGTCGGTGTCTCGGACTATACATTATCAGATTTTAAAGAGAGGCTTTCTTCGGTTGATTTTAAATTGAAGGAACATCTGAAACTGAGCAGAGAGCAAATAGATTCTGTAGAAGAATACCTGAAGCGCAAGAAGGCATTTTCCAATCCTAAAGATATTGTAGATTTCTTGAAGCTCATGATCCAACGCAATGGATCTAATCTCCTTATATATGATGGCAGTACCAAAACCAAAACGGATGTTGAAGTCTTCAGGCAGAAGCATGTCTTATTGTTCATTTCAGGCCTCAACAGGGTTGAAGATGAGATTTTGCTTTTGAATTCTATCCATGANAGATTGCAGGAAAATCCAACAGAGGCAATAAAAGGTTACAAGAAAGAGGACTTCAAGATTTTGTGGATCCCCATTGTGGTTTCCTGGGAAGAGGACCAGAGGATCAAATTCAACACACTGAAGAATATGATCAAATGGTACGCAGTGGAGTNCTTCTCTGAGTTACCAGGCATTGGGCTAATAAGAGAGAAGTTGAATTTCTGGGGTAAGCCTNTTATCCCAGTGCTCAACCCTCTAGGTGGCATAATGAATGAAGATGCCATGGACTTGATTTTCCAATGGGGGATAGATGCCTTCCCCTTTAGGAAAAGTGATGGCATTGATCTTACTCTGAAATGGAAGTGGTTCTGGGATGTATTGAAGAGAGTAAATCTTGGAATTCAGTTGGGAAAAGATGACCCCAAGCTTGTTCCTCGTTTCTGGATTGAAATAGAGAGCAAGAAGCTGAAGAAGCACCAGGATGCCCTTGACTGTGAGATTCAAGAGATTGTGAAGAGCTTGCTCTGTCTCAAACAGGATCCACAAGGGTGGGTCATTCTCACCAAAGGCAATAATGTAAAGCTTCTGGGCCATGGTGAACCCATGTATCAAACNCTGGCTGATTTTGAGATGTGGAAGGACAAAGTGCTTCAAAAGGAAGGTTTTGACATTGCCTTCAAAGAGTACTATGAGNTGAAGCTTAAAGAGATGTATGATCGTCAACCATGTGCATATCTCAATGTTGACGATCATACCAATGCTTCAAGTGTCCTAGCTACCATAACATGCCCAAATCCCACGTGTGGGCGTGTGATGGAGGTGACATCTATTAATTACAAGTGCTGCCAC

Protein Sequence

>Glyur000046s00004787.1
MSTAAVVSANGSTTGLIQKSSATATSPQQKAFLPNPFDLNDSQILDKVYLTHVSDDEICHTKTLFDLVSSVVLQSISQVPVTSFQPEFPTLKLISCQMITTRSAAHCVHQTTLWILQKLRSYSWDAKAVITLSAFSLEYGNYLLLNRVTPADILGNSLKQLNQVQXRKVPADXTELVTFIVQVVFQHIIEFAAWSDEGYDPEDVPDLTEALQEIPVVVYWTIAAVVAATGNLVGVSDYDLSDYRDRLSGVVQKLAVHLRICKVQIGNVXDYLNRRKIFDKPKDIVDCLKALIHPNGTVASPQIYEGNVHIKTGLEFFRHKHVLLFISGLDSIGDEILLLNSIHDRLQDNSNIEATKEKDDFKILWIPIVDSWDAGRKEQFKALKSGIKWYLVEYFSELPGRRIITDPERLSYVGNPIIPVFNPQGIITNQNAMDLIFQWGIDAFPFRESDGIALNLKYVTQISFKPDFPDLKRISCQMITTRGTAQCAHQTTMWILQRLRCYSWDAKALITLAAFSLEYGEFLHLRRVTTADQLXSSLKQLNQVQSRKVPADITDVVTFLVEVFQHIVQWETWSAMGYDTEEVHSLSDAMQEIPLVVYWAVATIVASTASLVGISSDYKLSKFKDRLSVVVINLKDHLEKCKVQIERIDDYQRRLKDSKNIKDVVGFLRLLIHGNGSSQTPQLYEGXILVKTGIEVFKQKHVLLFISGLHSIEDEILLLNSIYKRLQENPKVIIKGFKKEDFKILWIPIVDIWGDVLKQQFKTLKERMKWYVLEYFSELPGLGIVKQKLKYLDNKPVVSVINPQGEIINDNAMDIIFQWGIEAFPFRKSDGEDIAKKWSWFWKLMEKVDLDIEDIEKDNTSYIFIYGGNDSKWIQDFTMAIGKIKRRQNIKDVDVTIEHHQLGKDDPTRIPYFWIGIDGRKQNKTCQDTVDCEIQDAVKSMLCLKQDPLGWVILSRGRHITLLGHGEPMYQTVADFEIWKDSVHEKESFDVAFKEYYDTKFKEMSXRIPCAYINVDNNTSXVLATITCPNPTCGRVMEVTSVNYRCCHRDEPNSCKFVTMSLSNAAILPNPFDLTDSQILDKVYLTHLHDDDKCDKDVLFDIVSNVILKMITTPGGERYVHQTTMWILQHLRSYSWDAKALVTLAAFALEYGNLLYLTATSTSDQLVNSLKQLNQIQNRKAPATDLMELIMEVLQHIQEWXTWSVVGYDTLDVPSLSDAMQDIPVAVYWILASIVAATGNLVGVSDYTLSDFKERLSSVDFKLKEHLKLSREQIDSVEEYLKRKKAFSNPKDIVDFLKLMIQRNGSNLLIYDGSTKTKTDVEVFRQKHVLLFISGLNRVEDEILLLNSIHXRLQENPTEAIKGYKKEDFKILWIPIVVSWEEDQRIKFNTLKNMIKWYAVEXFSELPGIGLIREKLNFWGKPXIPVLNPLGGIMNEDAMDLIFQWGIDAFPFRKSDGIDLTLKWKWFWDVLKRVNLGIQLGKDDPKLVPRFWIEIESKKLKKHQDALDCEIQEIVKSLLCLKQDPQGWVILTKGNNVKLLGHGEPMYQTLADFEMWKDKVLQKEGFDIAFKEYYEXKLKEMYDRQPCAYLNVDDHTNASSVLATITCPNPTCGRVMEVTSINYKCCH

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00046	29183	47946	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000046s00004787.1	PF14576.1	SEO_N	39	282	5.40E-77
Glyur000046s00004787.1	PF14576.1	SEO_N	459	662	3.70E-70
Glyur000046s00004787.1	PF14577.1	SEO_C	828	1049	2.20E-64
Glyur000046s00004787.1	PF14576.1	SEO_N	1074	1109	4.00E-07
Glyur000046s00004787.1	PF14576.1	SEO_N	1109	1291	3.60E-63
Glyur000046s00004787.1	PF14577.1	SEO_C	1472	1627	1.10E-45

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.240
SRR1783600	control	4.275
SRR1783602	moderate drought stress	4.555
SRR1811619	moderate drought stress	4.525

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	33.136
DRR006520	Root Summer glycyrrhizin high producing strain	32.461
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.026
DRR006523	Root Summer glycyrrhizin low producing strain	19.408
DRR006524	Root Summer glycyrrhizin low producing strain	18.954
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.354
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.290

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	22.874
SRR2868004	Drought Stress (root)	19.778
SRR2967015	Control (root)	31.236

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.698
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.801
SRR9715739	Root	1.499
SRR9715742	Root	3.944
SRR9715743	Root	3.345

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.004
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.017
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.015
SRR8749032	Uninduced	0.010

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.144
SRR8400027	Control - Root	9.904