Gene detail

Gene detail information of Glyur000046s00004785

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G06430.1	6.00E-52	Thioredoxin superfamily protein
NR	XP_004495323.1	2.31E-112	PREDICTED: uncharacterized protein LOC101491125 [Cicer arietinum]
COG	YP_007171349.1	4.00E-13	thiol-disulfide isomerase-like thioredoxin [Dactylococcopsis salina PCC 8305]
trEMBL	tr\|G7I3X1\|G7I3X1_MEDTR	1.00E-104	Uncharacterized protein {ECO:0000313\|EMBL:AFK37529.1}

Sequence

Transcript Sequence

>Glyur000046s00004785.1
ATTCGGGCGTAGTTTCACAAAAATGTTATGCTGTGAATGAAATGAAAAGTGGCTAATTGCNGGTGCTCGTATTAGGAGTCGGGTTCTAATCATTTTGTATTGTCTCTGATGCTGGGATGAAATGGGTTTGATTCCTAANCCTAAGCAACCTCTGTTTTGTCTAAAATGGCCATGGGATGTTTTAAATCCTAACCCTAAGATTGCCCAAAACCCTAACCCCTGCAACTTTGAGNGTCCTTGGCTATTCAGGTCTCTCCAAAACCTTGGCTCAGTTGCTTTCCATTTTGCCAGCTCTGTCACAAAATCTTCAGGTCCTCAGAGTCCCAATTCCTTGGAACCGGATGGGAAAATTGGTCACAGCAGGAATTTGAATTTGGCATGGGGGAGGAACAAGAAAACAACTCCCAGNGGCGCCGAGCAGGCGGAGGCAGAGCAGCGAGCTTTTGCCGCCGCTCTGGCAAGTGGGAAGGAGGCCACCGTGCTTGAGTTCTACTCACCCAAATGCAGGCTCTGTAATTCCTTGCTTAATTTTGTTTCGGAGGTGGAGACCAGGNACTCTCAGTGGCTTAACATTGTCATGGCTGATGCTGAGAATGAGAATTGGCTGCCAGAGCTCCTTAATTATGATGTTAGTTATGTCCCTTGCTTTGTGCTTCTTGACAACAAAGGCAAGGCCCTGGCTAAGACCGGTGTTCCAAATAGTCGTTTACATGTTGTAGCGGGACTCTCCCATCTTCTCAATTTGAAGCGTCCTCAACAAAACAATGGTTGATGGGAGTCTTGGTGCATGAAAACCAACATTTGTTTGCGGTGCTGTTNTATGACCTTGACTTGCACATCTTTGACTTTATGTCTTAATTGGATGGTATTTATTGTGCTTTCGGTTGGAATTTGTCCCATGTGTAAGGTTTTCTTCGAGTAAAAAACATATACAATTCATCATGTNATTATCCTTTTTAAGATTCAACGAGTAAACTTCATTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00046	8721	12659	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006662 glycerol ether metabolic process

GO:0045454 cell redox homeostasis

molecular_function
GO:0015035 protein disulfide oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000046s00004785.1	PF00085.15	Thioredoxin	103	191	2.50E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	18.954
SRR1783600	control	19.135
SRR1783602	moderate drought stress	14.930
SRR1811619	moderate drought stress	14.885

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	17.811
DRR006520	Root Summer glycyrrhizin high producing strain	18.052
DRR006521	Root Winter glycyrrhizin high producing strain	8.451
DRR006522	Root Winter glycyrrhizin high producing strain	7.659
DRR006523	Root Summer glycyrrhizin low producing strain	14.021
DRR006524	Root Summer glycyrrhizin low producing strain	13.852
DRR006525	Leaf Summer glycyrrhizin high producing strain	15.252
DRR006526	Leaf Summer glycyrrhizin high producing strain	15.447

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	62.363
SRR2868004	Drought Stress (root)	54.242
SRR2967015	Control (root)	51.913

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	32.140
SRR9715740	Leaf	52.174
SRR9715741	Leaf	30.610
SRR9715739	Root	35.142
SRR9715742	Root	17.844
SRR9715743	Root	19.933

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	25.353
SRR8749028	MeJA induced 9h	13.732
SRR8749029	MeJA induced 9h	15.929
SRR8749030	Uninduced	8.092
SRR8749031	Uninduced	4.404
SRR8749032	Uninduced	11.139

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	50.841
SRR8400027	Control - Root	57.088