Gene detail

Gene detail information of Glyur000045s00010003

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G54110.1	3.00E-86	membrane-associated mannitol-induced
NR	XP_004487652.1	2.34E-144	PREDICTED: vesicle-associated protein 4-1-like [Cicer arietinum]
Swissprot	tr\|Q8VYN2\|VAP42_ARATH	2.00E-109	Vesicle-associated protein 4-2
trEMBL	tr\|V7BX66\|V7BX66_PHAVU	3.00E-143	Uncharacterized protein {ECO:0000313\|EMBL:ESW21638.1}

Sequence

Transcript Sequence

>Glyur000045s00010003.1
GTGTGCATTAAATAAAACGCTACCTGAAGGACACGTTCGCACCAAAGTCGTCGACAATCGAATACAAACGCTGCCTTTCGCTCTGTCTCTTGTTTGAGTTGCTTCCTTCTATTTCCGCAAACTCAATTCATTTCGAAGCTCTATCCAAAACAAAAACGGTGAGTTTTGGGATTCAATTTTAAGTTATACTCCACGGTGCCCTAACTCGATCACTTTCCGGCGAGACCATGGCCATCGCCGGCAATCAGAAGCCGAGCTCCGACGCGAAGCTCTTCCGGCTTTGTCCCTTCTGGAGTTCTTCGGGTAACGCTCACAACAACCACCCCGAAGGAAACGCTCAAAGGCCCTCCAAAACGGTGTCGTCTGTCGCCAGGTCGCTGCTACCTCCCCGGCGTAGACTCCGTCTCGACCCTTCCAATCACCTCTACTTTCCATATGAACCGGGTAAGCANGTTAGGAGTGCTGTTCGATTAAAAAACACTAGCAAGTCTCGTGTTGCTTTTAAGTTTCAAACTACGGCTCCAAAGAGTTGTTACATGCGGCCTCCTGGTGGTATTCTTGCTCCTGGAGAAAGCTTGATTGCGACCGTGTTTAAGTTTGTGGAGCAACCTGAAAACAATGAGAAGTTGTCAGACCAGAAGAACAGGGTCAAGTTCAAAATCATGAGTCTCAAAGTGGAAGAAGGGGTGGACTATGTACCTGAGCTGTTTGATGAACAAAAGGAGCTAGTGACAGTGGAACGAATCTTGGGGGTTGTATTTATAGATCCAGAACGGCCAACTCCAGCTTTGGAAAAACTGAGAAGACAGTTGGCTGAAGCTGATGCTGCAGTTGAAGCACGGAAGAAGCCTCCTGCAGAGCCTCGAGCTGTTGCTGAAGGTCTTGTAATTGATGAATGGAAAGAAAGAAGGGAGAAATACCTGGCCCGGCAACAGGTTCAAGCAGTAGATTCAGTGTAAAATGCAATTTGTTCTTCCAGCTAGTGCTTTTCTTCAGAGGAAGATATTCAAGATATCTTTGATGTCAATTTGTCGCCATCAACGTTGGATGCGCTTCAAGAGAATTGTTGGGGGGGGCGAATTGATTGGCAGCGGGAGTTTGAGATAACAAGATAACAGTGTGTTTGTCAAAATTCTTGTTCTTTGGAGGAACAGTCAATACTTGTACATAGTAGAGTCTGCTTGTTTGTAAAATAAATGCTAGTCCTCACTTCCATCCGCTTGTGAAATAATGTTGTTGAAATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00045	480226	483165	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0005789 endoplasmic reticulum membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000045s00010003.1	PF00635.21	Motile_Sperm	58	166	3.90E-28

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.943
SRR1783600	control	7.963
SRR1783602	moderate drought stress	6.452
SRR1811619	moderate drought stress	6.455

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	17.444
DRR006520	Root Summer glycyrrhizin high producing strain	17.210
DRR006521	Root Winter glycyrrhizin high producing strain	27.772
DRR006522	Root Winter glycyrrhizin high producing strain	28.050
DRR006523	Root Summer glycyrrhizin low producing strain	16.380
DRR006524	Root Summer glycyrrhizin low producing strain	16.655
DRR006525	Leaf Summer glycyrrhizin high producing strain	33.149
DRR006526	Leaf Summer glycyrrhizin high producing strain	32.316

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	13.926
SRR2868004	Drought Stress (root)	17.487
SRR2967015	Control (root)	17.007

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	31.933
SRR9715740	Leaf	45.254
SRR9715741	Leaf	43.442
SRR9715739	Root	6.671
SRR9715742	Root	11.136
SRR9715743	Root	8.373

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	43.559
SRR8749028	MeJA induced 9h	52.172
SRR8749029	MeJA induced 9h	63.122
SRR8749030	Uninduced	48.679
SRR8749031	Uninduced	55.437
SRR8749032	Uninduced	44.117

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	17.207
SRR8400027	Control - Root	14.364