Gene detail

Gene detail information of Glyur000045s00009995.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT3G20630.1	ubiquitin-specific protease 14
NR	XP_004487644.1	PREDICTED: ubiquitin carboxyl-terminal hydrolase 14-like isoform X1 [Cicer arietinum]
Swissprot	tr\|Q8L6Y1\|UBP14_ARATH	Ubiquitin carboxyl-terminal hydrolase 14
trEMBL	tr\|G7IR70\|G7IR70_MEDTR	Ubiquitin carboxyl-terminal hydrolase {ECO:0000256\|RuleBase:RU004435}

Sequence

Transcript Sequence

>Glyur000045s00009995.1
CAAAGATACTAAACTTGGTGGGTTAGGGCAAACACCGATTCCATTCCTCTCTCCCAATCTAAAACCCTCGTTTGAAATACTTCTCTCTGAAACCCAAGGGGTACTGCTACTACTACTAGCACTNCTTCGGGTTCGGGACGACAATGGATTTGCTCCGATCAAACCTTTCACGGGTTCGGATCCCCGAGCCTACCAATCGCGTGTACAAGCACGAGTGCTGCTTGTCCTTCGACACTCCTATGTCAGAAGGTGGATTGTTCATCGACATGTTCACTTTTCTCGCTTTTGGTAAGGACTACGTGGGTTGGAATTTTGAGAAGACCGGTAATCCGGTTTACTTGCACGTAAGGAAGACTAAGAAGTTGGTTCCAGAAGACAGGCCTTCTAAGAAACCCACTCTCCTAGCTATAGGTGTTGATGGGGGATTTGATAACAATGAGCCTGAATATGAAGAAACTCATAGTATAGTCATATTACCTGACTATGTATCTCTTCCGTTTCCTTCGGTGGAATTGCCGGAGAAGGTAAGGTTGGCTGCTGATGCTATCTTGCTAGCCACGGGTGCTGAACGGAAGGAGCAAGTTGCAGCTTGGACTGCTGATAAGAAACAAGTCAGTGCCTATGCAATGAATTTGCAGCAAATTGACAATGGTGTTGTTATTCCTCCATCTGGGTGGAAATGTTGTCAGTGTGACAAAACAGACAATCTTTGGTTAAATCTGNCTGATGGATTGATCCTTTGTGGGAGGAGAAATTGGGATGGAAGTGGTGGAAACAACCATGCCGTTGAACATTATAAAAAGACAGGATATCCACTTGCTGTAAAGCTCGGGACTATCACTGCTGATCTGGAAGCAGCAGATGTTTTCTCCTATCCAGAGGATGACAGTGTCTTGGACCCACTTTTAGCACAACACCTGGCATTTTTTGGCATTGATTTCTCATCACTGCAAAAGACTGAAATGACNACTGCTGAAAGAGAACTTGACCAAAATACCAATTTTGAATGGAATCGAATCCAAGAAAGTGGACAGGAAGTGGAACCAATTTTTGGACCTGGATATACAGGATTAGTCAATCTTGGAAACAGTTGTTACTTGGCAGCAACTATGCAAGTTGTATTTTCAACACGATCTTTCTCTTCACGGTACTATATAAACCAAAATCTAAAGAAGGCATTTGAGGTGGCTCCTGCTGATCCAACTGTGGACCTGAATATGCAGTTGACAAAGTTAGCACACGGTTTATTATCTGGTAAATATTCTGCTCCACCATTTGAGAATGATGACAGGGCAAATGTTGCAACTGCAACTACATCTGCCGAGCAGGAAGGGATANCCCCACGAATGTTCAAAACTTTAATTGCTGCCAGCCATCCTGAATTTTCATCTATGCGACAACAGGATGCTTTAGAATTTTTCCTTCATTTTCTTGACCAAGTTGAACGAGCTCATGTTGGGAAAANTGAACTGGATCCTGCAAGGAGTTTCAAGTTTGGTATTGAAGATCGAATCNTGTGTTCATCTGGAAAAGTTGCATACAATAGAAGACATGATTACATTCTTTCTCTGAATATCCCACTGCATGAAGCAACTAACAAAGAAGAATTGGAATTGTTTCACAAACTGAANGCAGAGAAACTTTCTGAAGGAAAGGAAGTGTCTGGTGATGAGATTGTACGTCCAAGGGTGCCTTTAGAAGCTTGCCTTGCAAACTTCTCAGCTCCTGAGGAGATACATGATTTTTACAGCAGTGCCTTGCAAAGGAAGACAACAGCGGTGAAGGCGGCTGGTCTGACATCATTTCCTGATTACNTGGTGTTGCACATGCGGAAATTTGTCATGGAGGAGGGATGGGTACCCAAAAAACTTGATGTATATATAGACGTTCCTGATATCATAGATATTAATCATATGCGTAGCAAAGGTCAACAGCCTGGGGAAGAGCTGTTACCAGATGGGGTACCCNTTGAGGATGATTCAGAAGGACCTTTAGCCAATGAAGACATTGTNTCACAGCTGGTTTCCATGGGTTTTAACCATATTCATTGCCAGAAAGCTGCTATAAATACGTCAAATACTGGAGTGGAAGAGGCAATGAATTGGTTGCTGTCTCACATGGATGATCCAGATATTGACATTCCTATTTCAAAAGGGNGTGGCTCTGATAGTGTTGACCAATCAAAAGTTGATACTCTGATTTCATTCGGATTTCAAGATGATGTTGCTCGGAAGGCGCTGAAGGCATCGGGTGGTGACATAGAGAAAGCAACAGATTGGATCTTTAGCAATCCCAATGCATCGGTTTCCAGTATGGATGCTACTGCATCAAACACNACATCTGATCCAAATGATGCTGACTTACCCGATGGAGGAGGAAGATATCGACTTATTGGAATTGTTAGCCACATTGGAACCTCGACCCATTGTGGTCACTATGTTGCACACATCTTAAAAGATGGTAGATGGGTTATTTTTAACGACAACAAGGTAGGGGCTTCCATTAATCCTCCCAAGGACATGGGCTACCTTTACTTCTTCGAGAGGCTTGATTGTTGAGTTTTGAATTGTGTCAAGAATTGAACTTAGAAATATTTAAACTTTTAAGANGCACACTGTTTTAAAATGGTGCAACCAGCTACCAATTTGTGCTGATGGGATACATACTTGCTGGTGGCATGGTAAACACTAAACAATCCTCATTGGCTGCCTCTATTTTTTGGGTTCTGCGGTAGTGCACCCTTTTGGGAACGGGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00045	432936	441038	+

Gene family

Gene family	subfamily
Ubiquitin Family	USP

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006511 ubiquitin-dependent protein catabolic process

molecular_function

GO:0005515 protein binding

GO:0008242 omega peptidase activity

GO:0008270 zinc ion binding

GO:0036459 thiol-dependent ubiquitinyl hydrolase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000045s00009995.1	PF02148.14	zf-UBP	180	253	3.60E-15
Glyur000045s00009995.1	PF00443.24	UCH	307	787	1.80E-39
Glyur000045s00009995.1	PF00627.26	UBA	619	655	1.80E-06
Glyur000045s00009995.1	PF00627.26	UBA	678	713	1.00E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	22.516
SRR1783600	control	22.576
SRR1783602	moderate drought stress	25.106
SRR1811619	moderate drought stress	24.813

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	37.474
DRR006520	Root Summer glycyrrhizin high producing strain	36.818
DRR006521	Root Winter glycyrrhizin high producing strain	36.243
DRR006522	Root Winter glycyrrhizin high producing strain	35.349
DRR006523	Root Summer glycyrrhizin low producing strain	33.741
DRR006524	Root Summer glycyrrhizin low producing strain	33.997
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.755
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.802

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	45.232
SRR2868004	Drought Stress (root)	36.016
SRR2967015	Control (root)	38.766

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	24.263
SRR9715740	Leaf	22.820
SRR9715741	Leaf	25.521
SRR9715739	Root	10.291
SRR9715742	Root	28.795
SRR9715743	Root	26.267

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	44.583
SRR8749028	MeJA induced 9h	45.498
SRR8749029	MeJA induced 9h	29.736
SRR8749030	Uninduced	15.153
SRR8749031	Uninduced	8.745
SRR8749032	Uninduced	10.275

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	45.666
SRR8400027	Control - Root	37.641