Gene detail

Gene detail information of Glyur000045s00009991

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G11360.4	1.00E-49	Adenine nucleotide alpha hydrolases-like superfamily protein
NR	KHG08960.1	9.16E-104	Uncharacterized protein F383_12625 [Gossypium arboreum]
COG	YP_007039773.1	8.00E-09	UspA domain protein [Saccharothrix espanaensis DSM 44229]
Swissprot	tr\|Q8LGG8\|USPAL_ARATH	8.00E-07	Universal stress protein A-like protein
trEMBL	tr\|A0A072TCT6\|A0A072TCT6_MEDTR	2.00E-101	Universal stress family protein {ECO:0000313\|EMBL:KEH15227.1}

Sequence

Transcript Sequence

>Glyur000045s00009991.1
AAATCGTAGCCCACTGTAACTCACTCTCAAGGTTGTTCCCAAACTCGCATCGCATCTTCGTCAAATATCAATCAAACTCAACGCCATTGTACCTTGTATTTGTAGTTGTTTGTTTTCACACTTGCCTACTTTGGATAGCTAGCTACAAAGAAGAAGCTTCTCTTTTCTAGTTTCTATTTCAATTTCTCTCACTCTCACTCACACACACACACACACAACCCTTTCGGAGAGTAAGAAATATGCATCAGCGACACATGGAATCCGACCCTGAGCTTCCTCAAATCAAAACCCACCACCACCAGTCTTCTCCCGTCTCCGCAGCCACGCCGACCCCAACCGCCGGCGCCCGCCGCAAAATCGGCGTGGCGGTTGACCTCTCCGACGAGAGCGCGTACGCCGTGAGGTGGGCGGTCCAGCAGTACATCCGCCCTGGCGACGCCGTGATCCTCCTCCACGTCAGCCCTACCAACGTCCTCTTCGGCGCTGATTGGGGCTCCATCCACCTCTCCCTCAACACCGACGACGACGATAACACCTCCGCCTCCCCCACCACAGCCAACCAGGAGAAGGTGGAGGACGATTTCGACGCGTTCACGGCGTCTAAGGCCGGAGATCTCGCGAGGCCGTTACGGGAGGCGCAGATTCCGTTTAAGATCCACATTGTGAAGGACCACGACATGAGGGAGCGCCTCTGCCTAGAGGTCGAGAGGCTCGGCCTCAGCGCACTCATCATGGGAAGCCGCGGAATCGGCGCCGCACGACGCGGCAGCGACGGCAAGCTCGGCAGCGTCAGTGACTACTGCGTCAATCACTGCGTCTGCCCCGTCGTCGTCGTCCGTTACCCCGACGACAAGGACGACGCCGATGTCGCCAAAGCCGTCGTGGCGCCGCCCAAGGAAAACCAAGAGGAGGAGGAGGAAAAGGACGCGCCGAGTCAACATAGCAAAGGACTTAGGAGTGACGGGGGATTAGCCGGAGCCAAGTCATCCCTTGATCCTGTCTCTTGAGAATGTATCTGGTCCAAAAAGAATTCACAAAACTGTTGTAGAGTGCTGTCTTTCTTTCCCTGTCACGTTGTACCAAGAGCACCTCCTGCATATGAGCTATTGAAAGATTAAACNTGACTTTGTATGCCTTGATGTGATCTCGGTTCGTGTATGCTGTTGGGGTATTTTTATTTTTTTTCTCTTTCTTTTTCTTCCATAATATGGTATATGTATACTCTCTGAGGCAAATGTACAAGTTTGCCTTTCAACTGTTTTAGGGGTTATTGTCCTCCCATCTGTGTGGGAGATCACACTATCATAATGACCAAACATGTTTAAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00045	398941	402753	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006950 response to stress

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000045s00009991.1	PF00582.21	Usp	37	200	2.60E-27

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	30.896
SRR1783600	control	31.228
SRR1783602	moderate drought stress	31.851
SRR1811619	moderate drought stress	31.536

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	31.888
DRR006520	Root Summer glycyrrhizin high producing strain	31.533
DRR006521	Root Winter glycyrrhizin high producing strain	25.489
DRR006522	Root Winter glycyrrhizin high producing strain	24.937
DRR006523	Root Summer glycyrrhizin low producing strain	26.195
DRR006524	Root Summer glycyrrhizin low producing strain	25.633
DRR006525	Leaf Summer glycyrrhizin high producing strain	23.589
DRR006526	Leaf Summer glycyrrhizin high producing strain	23.520

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	33.163
SRR2868004	Drought Stress (root)	32.368
SRR2967015	Control (root)	32.971

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	67.917
SRR9715740	Leaf	62.129
SRR9715741	Leaf	77.045
SRR9715739	Root	42.239
SRR9715742	Root	42.410
SRR9715743	Root	42.600

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	105.657
SRR8749028	MeJA induced 9h	83.595
SRR8749029	MeJA induced 9h	76.399
SRR8749030	Uninduced	18.309
SRR8749031	Uninduced	1.380
SRR8749032	Uninduced	12.278

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	31.138
SRR8400027	Control - Root	32.385