Gene detail information of Glyur000045s00009987 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G27290.1 | 1.00E-116 | S-locus lectin protein kinase family protein |
| NR | XP_006592581.1 | 1.60E-168 | PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290-like [Glycine max] |
| Swissprot | tr|O81832|Y4729_ARATH | 3.00E-137 | G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 (Precursor) |
| trEMBL | tr|K7LUY1|K7LUY1_SOYBN | 6.00E-167 | Serine/threonine-protein kinase {ECO:0000256|PIRNR:PIRNR000641} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00045 | 349613 | 351848 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000045s00009987.1 | PF01453.19 | B_lectin | 79 | 200 | 1.20E-31 |
| Glyur000045s00009987.1 | PF00954.15 | S_locus_glycop | 227 | 336 | 5.40E-30 |
| Glyur000045s00009987.1 | PF08276.6 | PAN_2 | 357 | 423 | 4.70E-23 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.316 |
| SRR1783600 | control | 2.233 |
| SRR1783602 | moderate drought stress | 1.453 |
| SRR1811619 | moderate drought stress | 1.450 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.577 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.524 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.860 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.739 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.643 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.730 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.589 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.543 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 22.134 |
| SRR2868004 | Drought Stress (root) | 25.606 |
| SRR2967015 | Control (root) | 23.605 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.185 |
| SRR9715740 | Leaf | 4.083 |
| SRR9715741 | Leaf | 9.147 |
| SRR9715739 | Root | 0.548 |
| SRR9715742 | Root | 3.793 |
| SRR9715743 | Root | 3.261 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 11.865 |
| SRR8749028 | MeJA induced 9h | 22.754 |
| SRR8749029 | MeJA induced 9h | 7.624 |
| SRR8749030 | Uninduced | 12.905 |
| SRR8749031 | Uninduced | 4.491 |
| SRR8749032 | Uninduced | 6.783 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 11.090 |
| SRR8400027 | Control - Root | 7.705 |