Gene detail

Gene detail information of Glyur000045s00009986

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G27290.1	1.00E-109	S-locus lectin protein kinase family protein
NR	XP_007149655.1	0	hypothetical protein PHAVU_005G088000g [Phaseolus vulgaris]
Swissprot	tr\|O81832\|Y4729_ARATH	4.00E-135	G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 (Precursor)
trEMBL	tr\|V7BUN3\|V7BUN3_PHAVU	0	Serine/threonine-protein kinase {ECO:0000256\|PIRNR:PIRNR000641}

Sequence

Transcript Sequence

>Glyur000045s00009986.1
ATGGAAAGCTTCAAGGTGTTGCTAGTTTTGTGCTCTCTCCTGTTCCACTTCATACCAAGCTTCAACACGTTGGAAACCATTTCTCCAGGACAATCTGTGAAAGACAATGAGACTCTAGTTTCAGCAGATGGGACTTTTGAAGCTGGATTCTTCAACTTTGGTGACCCAAATAGCCAATATTTGGGTATATGGTACAAGGGTGTTTCTCCAAGAACAGTGGTGTGGATAGCAAATAGAGATGCCCCACTTGGAAACTCCTCAGGGGTTCTGAATGTCACTGATGGAGGAACTCTTGTTGTTGTTGATGATGCTAAAGGGGTTATTGTGTGGTCCTCCAATACATCAACAACAGCAAGAACAAAGCCAGTTGTTCAGCTCTTGGAGACTGGAAACCTTGTTGTGAAAGAAGAAAGCAACCCAGAGAATGTTCTGTGGCAAAGTTTTGATCTTCCTGGGGACACTTTGCTCCCAGGTATGAGGATTCGAAGTAGCATGGTAAGTGGTAACTATACATCCTTGACATCTTGGAGAGACACACAGGATCCTGCTAGTGGTGTGTATTCTTACCATATAGATACTCATGGTTTTCCTCAAGTGGTGATTACAAAGGAAAACGCATTATTGTTCAGAGCAGGTTCATGGAATGGCAACATTTTATCTGGGATTCCTTCTGAAACACTGTACAAGTTCTTCAATTTCTCTTTTGTGATTACTGAGAAGGAAGTTTCCTATGGATATGAGCTCTTGAACCAGTCAATTGTTTCAAGGTACATGCTCACTTCGACAGGCCAAGTGGANCGTTACATGTTGTCAGATCAGACAAACACTTGGCAACTTTTCTTTGTTGGCCCTTCAGATCAGTGTGATAACTATGCCCTCTGTGGTGCAAATTCTAATTGTGATGTTAGTAACTCTCCAACATGTGAATGCCTTAAGGGCTTCCTTCCCAAGTCTCAAGAGAATTGGAATTCACAAAGGTGGTCTGAAGGGTGTGTTAGGAGAGTTGATTTAGATTGTGGCAGTGGCAGCAGTGATGGCTTTCTGAAGTATCAGGTAATGAAGTTGCCAGACACATCAACCTCATGGTTTGACAGGAACATGAGCCTTGAGGAATGTGAGAAAACCTGCCTAAGAAACTGCTCTTGCACAGCATATGCAAATTTAGATATCAGAGATGGTGGAAGTGGATGCTTGCTTTGGTTTAATAACATTATGGATGTGAGAAAACTACCCTCTGGAGGACAAGATCTTTACATAAGAGTTGCAGCTTCAGAACTAGAATTTGGTGTGTTGATTAATAGTGCTTTTAACCTCTCAGATCANAACAAGGGCTTGAGCAAGAAGAAGCTTGCAGGAATTCTGGTAGGCTGTTCTATGTTCATCATGGTCATGATAATACTGGGGGGAGTGACCATACNTCGGGTTAGGAGGAAGAAACTAGAGAAGCCAGGTAATTATTTAGTTATNTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00045	344528	346335	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0048544 recognition of pollen

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000045s00009986.1	PF01453.19	B_lectin	70	182	7.30E-30
Glyur000045s00009986.1	PF00954.15	S_locus_glycop	209	318	3.80E-32
Glyur000045s00009986.1	PF08276.6	PAN_2	339	407	1.00E-23

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.735
SRR1783600	control	0.739
SRR1783602	moderate drought stress	0.624
SRR1811619	moderate drought stress	0.597

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.394
DRR006520	Root Summer glycyrrhizin high producing strain	0.361
DRR006521	Root Winter glycyrrhizin high producing strain	0.735
DRR006522	Root Winter glycyrrhizin high producing strain	0.682
DRR006523	Root Summer glycyrrhizin low producing strain	0.225
DRR006524	Root Summer glycyrrhizin low producing strain	0.151
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.751
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.002

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.468
SRR2868004	Drought Stress (root)	25.619
SRR2967015	Control (root)	15.355

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	14.050
SRR9715740	Leaf	7.476
SRR9715741	Leaf	22.475
SRR9715739	Root	0.155
SRR9715742	Root	2.867
SRR9715743	Root	1.947

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.382
SRR8749028	MeJA induced 9h	36.056
SRR8749029	MeJA induced 9h	13.795
SRR8749030	Uninduced	60.104
SRR8749031	Uninduced	51.921
SRR8749032	Uninduced	18.886

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.887
SRR8400027	Control - Root	5.404