Gene detail information of Glyur000045s00009980 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G27290.1 | 9.00E-52 | S-locus lectin protein kinase family protein |
| NR | AES89916.2 | 1.10E-125 | S-locus lectin kinase family protein [Medicago truncatula] |
| Swissprot | tr|O81832|Y4729_ARATH | 4.00E-59 | G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 (Precursor) |
| trEMBL | tr|G7JF50|G7JF50_MEDTR | 4.00E-126 | S-locus lectin kinase family protein {ECO:0000313|EMBL:AES89916.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00045 | 309363 | 315382 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000045s00009980.1 | PF00954.15 | S_locus_glycop | 27 | 72 | 3.70E-08 |
| Glyur000045s00009980.1 | PF08276.6 | PAN_2 | 93 | 157 | 4.20E-16 |
| Glyur000045s00009980.1 | PF00954.15 | S_locus_glycop | 331 | 441 | 5.40E-28 |
| Glyur000045s00009980.1 | PF08276.6 | PAN_2 | 462 | 530 | 4.50E-22 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.761 |
| SRR1783600 | control | 2.821 |
| SRR1783602 | moderate drought stress | 2.712 |
| SRR1811619 | moderate drought stress | 2.843 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.500 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.381 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.623 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.803 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.220 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.119 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.215 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.118 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.536 |
| SRR2868004 | Drought Stress (root) | 3.831 |
| SRR2967015 | Control (root) | 4.506 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.289 |
| SRR9715740 | Leaf | 7.969 |
| SRR9715741 | Leaf | 11.937 |
| SRR9715739 | Root | 2.324 |
| SRR9715742 | Root | 4.221 |
| SRR9715743 | Root | 4.431 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.921 |
| SRR8749028 | MeJA induced 9h | 1.271 |
| SRR8749029 | MeJA induced 9h | 0.124 |
| SRR8749030 | Uninduced | 0.619 |
| SRR8749031 | Uninduced | 0.341 |
| SRR8749032 | Uninduced | 0.135 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.293 |
| SRR8400027 | Control - Root | 5.119 |