Gene detail

Gene detail information of Glyur000045s00009978

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G27290.1	1.00E-118	S-locus lectin protein kinase family protein
NR	XP_006594796.1	0	PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290-like isoform X1 [Glycine max]
Swissprot	tr\|O81832\|Y4729_ARATH	7.00E-153	G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 (Precursor)
trEMBL	tr\|K7M2F6\|K7M2F6_SOYBN	0	Serine/threonine-protein kinase {ECO:0000256\|PIRNR:PIRNR000641}

Sequence

Transcript Sequence

>Glyur000045s00009978.1
ATGCATGGTTTTTGCAAAGTTAACAACTTGATGAAAGTTATGTCTTTCATGAGCATCATTTTCCTTGCCTATCATATACTTGTCTGTTTCTCTGAAATCTCTTTAGCAGTTGACTCCATATCTCAGTCCTTGTCCCTAATAGATGATGGCAACACCTTGGTCTCCAAAGGTGGAACCTTTGAACTTGGGTTCTTCACCCCAGGGAATTCCCAGAAACGTTACCTGGGGATTTGGTACAAGAAAATCCCAATTCAAACAGTGGTTTGGGTTGCAAACCGGCTCAATCCAATCAATGGTTCATCTGGGACATTAAGGTTAAACATCAGTGGGAACCTTGTCCTCACCCACAACAACAACAGCAACAACAACACTGTTGTTGTTTGGTCCACAACCTCAACCTCTCTTAGAAAACCACAGAGTCCAGTGGCCATGCTTTTAGATTCTGGCAATCTTGTGGTAATAGATGAGAAAGAAGCAAACAAAGAGTCCTACTTGTGGCAAAGCTTTGACTACCCAACTGACACATTCTTACCAGACATGAAGTTTGGTTTGGACTTCAGAACTGGTCTCAATAGGAGGCTAATNGCTTGGAAGAGTCCTGATGATCCTTCTCCTGGAGACTTCTCTTTTGGTATGGTGCCACATAACTATCCTGATGCATATATGATGAAGGGTGANAGAAAGTTCTACAGAAGTGGACCATGGAATGGCCTTCACTCAAGTGGCTCACCACAAGTAAAACCCAACCCCATTTATGACTTCAGGTTTGTTTTCAATAAGGATGAGCTTTACTACACTTATAGCCTCAAGAACTTGTCTGCGATCACGCGGTTAGTGCTGAATGGAACGGCCAATGTTCGGAGGCGTTACGTGTGGATCGAATCAGCACAGAGATGGGAGACATACACATCAGTGCCATTGGACTTGTGTGACACTTATGCACTTTGTGGAGCTTATGCAAGTTGTGCTATCGCAGAATCACCAGTGTGCCAATGTATGGAAGGTTTCAAGCCTAAGTCACCTCAGGCATGGTACTCAATGGATTGGTCTCACGGGTGTGTCCGCGATAAGCCATTGAGCTGCAAGGACAAACAAAAGGATGGGTTTGTCAAATTGACTGGCCTGAAAGCTCCTGACACTACACATAGTTGGCTTGATCAGACAATTGGTTTAGAGGAATGCAGAGAAAAGTGCTTGGATAACTGTTCTTGTATGGCCTATGCAAATTCAGATGTCACTGGACAAGGGAGTGGCTGTGCATTGTGGTTTGGTGATCTAATTGACATTAGACAGTTTTCAGCTGGAGGCCAGGACCTATATGTTCGAATAGATGCTTCAGAATTAGAACACGCCAATGAGGGCCACAAGAAGAAAGGAGTCATAGTAGCAGTAACAGTTTCTCTGGCCGTGGCAGCGGTTTCCGGTATAATCATACTTTGTTGGTGTTATAGACAGAAATCCCGCACCAATTTAAAAGATAAACCAGACTTCAGTATCAGAGAAGATCAAAACAGTGGAATGCAAGTGGATGATATGGATCTACCAGTCTTTAACTTGTCAACAATAGCAAAGGCCACTAACAACTTTACAACCAACAACAAAATTGGAGAAGGTGGTTTTGGACCTGTATACCGGAATATCATGGAAAGGAAAACCGCAACAAATACTAATTATGAGATTAATATGACAGCAGCAAATAAGGAAACAAATCCAAATCTCTTCAGTCATGCTGATTGTGAGATTATTATGGAAAGGAAGAGTTCAGCAAATGCTAATTATGAGATTGATATGACAGCAGCAAATAAGAAACAAGTTCCTTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00045	295025	299647	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0048544 recognition of pollen

cellular_component

GO:0005741 mitochondrial outer membrane

GO:0016021 integral component of membrane

molecular_function
GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000045s00009978.1	PF01453.19	B_lectin	85	204	1.70E-31
Glyur000045s00009978.1	PF00954.15	S_locus_glycop	230	340	1.80E-31
Glyur000045s00009978.1	PF08276.6	PAN_2	361	429	8.00E-23

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.865
SRR1783600	control	3.796
SRR1783602	moderate drought stress	3.860
SRR1811619	moderate drought stress	3.736

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.847
DRR006520	Root Summer glycyrrhizin high producing strain	0.860
DRR006521	Root Winter glycyrrhizin high producing strain	0.183
DRR006522	Root Winter glycyrrhizin high producing strain	0.179
DRR006523	Root Summer glycyrrhizin low producing strain	1.547
DRR006524	Root Summer glycyrrhizin low producing strain	1.513
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.348
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.454

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.878
SRR2868004	Drought Stress (root)	9.911
SRR2967015	Control (root)	11.513

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.100
SRR9715740	Leaf	7.071
SRR9715741	Leaf	9.488
SRR9715739	Root	1.265
SRR9715742	Root	9.936
SRR9715743	Root	8.176

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.372
SRR8749028	MeJA induced 9h	1.002
SRR8749029	MeJA induced 9h	0.428
SRR8749030	Uninduced	0.717
SRR8749031	Uninduced	0.076
SRR8749032	Uninduced	0.089

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	14.090
SRR8400027	Control - Root	10.073