Gene detail information of Glyur000045s00009974 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G54510.1 | 0 | Auxin-responsive GH3 family protein |
| NR | XP_003540050.1 | 0 | PREDICTED: indole-3-acetic acid-amido synthetase GH3.6-like [Glycine max] |
| COG | YP_003444757.1 | 3.00E-20 | alpha-L-glutamate ligase [Allochromatium vinosum DSM 180] |
| Swissprot | tr|Q9LSQ4|GH36_ARATH | 0 | Indole-3-acetic acid-amido synthetase GH3.6 |
| trEMBL | tr|I1LSS1|I1LSS1_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G17510.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00045 | 250780 | 253519 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000045s00009974.1 | PF03321.8 | GH3 | 18 | 373 | 5.30E-118 |
| Glyur000045s00009974.1 | PF03321.8 | GH3 | 375 | 538 | 2.10E-57 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.474 |
| SRR1783600 | control | 1.483 |
| SRR1783602 | moderate drought stress | 1.109 |
| SRR1811619 | moderate drought stress | 1.124 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.064 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.064 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.436 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.433 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.661 |
| SRR2868004 | Drought Stress (root) | 2.874 |
| SRR2967015 | Control (root) | 2.473 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.945 |
| SRR9715740 | Leaf | 0.437 |
| SRR9715741 | Leaf | 1.366 |
| SRR9715739 | Root | 0.838 |
| SRR9715742 | Root | 0.588 |
| SRR9715743 | Root | 0.968 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 121.568 |
| SRR8749028 | MeJA induced 9h | 402.829 |
| SRR8749029 | MeJA induced 9h | 87.371 |
| SRR8749030 | Uninduced | 319.642 |
| SRR8749031 | Uninduced | 79.186 |
| SRR8749032 | Uninduced | 95.074 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.537 |
| SRR8400027 | Control - Root | 2.008 |