Gene detail

Gene detail information of Glyur000045s00009968

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G20660.1	0	organic cation/carnitine transporter4
NR	XP_003596552.1	0	Solute carrier family 22 member 15-like protein [Medicago truncatula]
COG	NP_541718.1	3.00E-27	major facilitator transporter [Brucella melitensis bv. 1 str. 16M]
Swissprot	tr\|Q9LHQ6\|OCT4_ARATH	0	Organic cation/carnitine transporter 4
trEMBL	tr\|A2Q643\|A2Q643_MEDTR	0	Organic cation/carnitine transporter {ECO:0000313\|EMBL:AES66803.1}

Sequence

Transcript Sequence

>Glyur000045s00009968.1
AATATTCTTAAGCTAGTCTATATACATTGGACTCCACACTCTCTGGCTCTGCCATATATATAGATATATATATATATACACACATCACAGAAACTGAAGCAGAAGCAAAAAAGAAAAGAAAGCGAGAGAGAAAAACACACACACAAATGGCGGCCACATTGTCCTCGGATTCCGATGACCTNCGGTCGCCGATCCTTCCGCCGGCGGAGAAGAAGGCAGCGACGGAGAAGATCTGCATCGACGAGATGCTGAAGAAGTACTGCGGTGAGTTCGGAAGGTGGCAGTTGAAGCACTTCATCCTCACCAGCCTCGCCTGGGCGCTTGAGGCTTTCCACACCATGGTCATGATTTTCGCCGATCGGGAACCTGACTGGAGCTGCGTTCCCGGCACGTCCTGCGCCGCCGCCGGTGGAAGCGTCTGCGAACTACCGCCGGACTCGTGGGAGTGGATTGGCGGCGCCGCCGCCTCCACCGTGTCCGATTGGGGTTTGATTTGCGGTGACAAGTTTAAGGTTGGGCTCGTTCAGGCTGTGTTCTTCGCCGGCTGCATGATTGGAGCCGGAGTATTTGGCCACCTCTCGGACTCATCTCTAGGAAGGAAAGGCTCTCTCACAGTGGTATGCGCCCTAAACGCCATCTTCGGCTGCCTAACAGCATTCTCCCCAAACTACTGGACNTACGTCCTCCTCCGCCTCCTCACCGGCTTTAGCAGNGGCGGCGTGGGCCTCTGCGCCTTCGTCCTCGCCACCGAGCCCATCGGCCCAACAAANCGCGGCGCAGCGGGGATGTCCACCTTCTACTTCTTCTCTGGCGGCATTGCGATCCTCTCATGCGTCGCCTACATCTTCCAAACATGGCGCGTTCTCTACATCGCCGCCTCCATCCCCTCTCTCCTTTACATAGTCCTGGTCCTCCCCTTCATCTCGGAATCCCCGAGATGGTACCTNGTTCGGGGGAGAGTAAACGAGGCCATGAAACTCATGTCCACCATTGCTTCCTCAAACGGGAAGNACCTTCCCGAAGGTGTTCTCCTTGCACTCGATGAAGAAGTATCCGAAGAAGCAATAACAAATGATATAGTAAATATAAATATAAACTCCACGGGCTACAACCACCTAGTAACATGCAAAAACGAACGCTTGGAAAACAAGGATGCACTTGTTGGGTCCATCGTGGACGTACTCCGCTCCCCGGTTACTCGTATTAGGTTGTTTCTTGCTGTGGCACTTAATTTCTTAGGCGCTGTGGTGTACTATGGTCTTAGCTTAAACGTGGTGAACCTCGAAACCAATCTCTACATGAACGTGCTGCTGAATGCGGTGGCGGAGATGCCGGCGTTCACGATAACGGCGGTGTTGTTGGACAGGTTTGGGAGGAAGCCGTTGACGATAGGGACGATGTGGTTCAGCGGGTTTTTCTGCTTGATGGGGAGTTTGATGGGTAACGTTGGGGTTTGGAAGGTGGTGAAAATGGTGTGTGGCGTTTTGGGGATATTTGGGATGGCTGGGACTTATAACTTGTTGTTCATTTACACTGCGGAGTTGTTCCCTACGGTGGTGAGGAATGTCGCGCTTGGGAGCACAACGCAGGCATCGCAACTTGGGGCCATATTGGCGCCGTTTGTGGTCGTTTTGGGTGGTTGGTTGCCGTTTGGGGTGTTTGCGGCGTGCGGGATAATGGGTGGAATGTTTGCGTTTTATCTGCCGGAGACGCTGAACCTGCCACTGTATGATACATTTGGTGGATTGGAAGCTGGGTTAATTGCATGATGCTTTATATATACAGCTTTCTTGTTGATGTCAAAAAAAAAAAGGACTGCTTGTTATTATTACTCTTTTTATTTTTGGTCAAGATTATTATTAGTCTTAGATTAGACATAAGACATGTTCTTTGGTGATTGTTATAGGATGGGTGTGGTGTGCCAAGTCTCCAACAGAACATGCAACAAAGACAGGTTTAGTTTTGGGGTCTCGATCAGTGCTACCTAGCTTTATTTCCCTTTTCTTATTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00045	223679	229757	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055085 transmembrane transport

cellular_component
GO:0016021 integral component of membrane

molecular_function

GO:0005215 transporter activity

GO:0022857 transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000045s00009968.1	PF00083.19	Sugar_tr	119	529	1.20E-29

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.667
SRR1783600	control	8.780
SRR1783602	moderate drought stress	12.916
SRR1811619	moderate drought stress	12.834

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.671
DRR006520	Root Summer glycyrrhizin high producing strain	1.670
DRR006521	Root Winter glycyrrhizin high producing strain	6.434
DRR006522	Root Winter glycyrrhizin high producing strain	6.523
DRR006523	Root Summer glycyrrhizin low producing strain	3.369
DRR006524	Root Summer glycyrrhizin low producing strain	3.459
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.659
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.487

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	34.410
SRR2868004	Drought Stress (root)	20.057
SRR2967015	Control (root)	25.519

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	31.573
SRR9715740	Leaf	22.292
SRR9715741	Leaf	39.490
SRR9715739	Root	4.004
SRR9715742	Root	10.301
SRR9715743	Root	9.681

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.043
SRR8749028	MeJA induced 9h	8.521
SRR8749029	MeJA induced 9h	4.407
SRR8749030	Uninduced	10.657
SRR8749031	Uninduced	4.946
SRR8749032	Uninduced	5.022

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	14.642
SRR8400027	Control - Root	10.877