Gene detail information of Glyur000045s00009967 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G23960.2 | 4.00E-87 | terpene synthase 21 |
| NR | XP_004487631.1 | 0 | PREDICTED: (-)-germacrene D synthase-like [Cicer arietinum] |
| Swissprot | tr|Q6Q3H3|TPSGD_VITVI | 8.00E-172 | (-)-germacrene D synthase |
| trEMBL | tr|A2Q649|A2Q649_MEDTR | 0 | Terpene synthase-like; Terpenoid synthase {ECO:0000313|EMBL:ABN09069.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00045 | 213634 | 219158 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000045s00009967.1 | PF01397.16 | Terpene_synth | 31 | 210 | 1.90E-56 |
| Glyur000045s00009967.1 | PF03936.11 | Terpene_synth_C | 240 | 355 | 3.80E-39 |
| Glyur000045s00009967.1 | PF03936.11 | Terpene_synth_C | 354 | 475 | 4.80E-31 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.271 |
| SRR1783600 | control | 0.257 |
| SRR1783602 | moderate drought stress | 1.072 |
| SRR1811619 | moderate drought stress | 1.139 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.014 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.079 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.016 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.104 |
| SRR2868004 | Drought Stress (root) | 7.493 |
| SRR2967015 | Control (root) | 11.264 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.255 |
| SRR8749028 | MeJA induced 9h | 3.801 |
| SRR8749029 | MeJA induced 9h | 0.646 |
| SRR8749030 | Uninduced | 5.298 |
| SRR8749031 | Uninduced | 4.562 |
| SRR8749032 | Uninduced | 3.709 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.911 |
| SRR8400027 | Control - Root | 1.672 |