Gene detail information of Glyur000045s00009965.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G50600.1 | 3.00E-141 | scarecrow-like 5 |
| NR | XP_004487630.1 | 0 | PREDICTED: chitin-inducible gibberellin-responsive protein 1-like [Cicer arietinum] |
| Swissprot | tr|Q69VG1|CIGR1_ORYSJ | 0 | Chitin-inducible gibberellin-responsive protein 1 |
| trEMBL | tr|G7ITP3|G7ITP3_MEDTR | 0 | GRAS family transcription factor {ECO:0000313|EMBL:AES66819.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00045 | 203329 | 205074 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | GRAS |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000045s00009965.1 | PF03514.9 | GRAS | 210 | 580 | 1.20E-128 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.774 |
| SRR1783600 | control | 4.610 |
| SRR1783602 | moderate drought stress | 9.852 |
| SRR1811619 | moderate drought stress | 9.699 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 225.182 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 222.555 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 41.456 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 40.349 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 227.673 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 226.762 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 97.591 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 97.355 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 18.281 |
| SRR2868004 | Drought Stress (root) | 64.030 |
| SRR2967015 | Control (root) | 185.338 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 436.656 |
| SRR9715740 | Leaf | 471.995 |
| SRR9715741 | Leaf | 462.233 |
| SRR9715739 | Root | 300.267 |
| SRR9715742 | Root | 689.959 |
| SRR9715743 | Root | 607.614 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 624.016 |
| SRR8749028 | MeJA induced 9h | 1003.508 |
| SRR8749029 | MeJA induced 9h | 540.158 |
| SRR8749030 | Uninduced | 398.745 |
| SRR8749031 | Uninduced | 303.227 |
| SRR8749032 | Uninduced | 285.527 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 21.808 |
| SRR8400027 | Control - Root | 81.354 |