Gene detail

Gene detail information of Glyur000045s00009964.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G54590.2	0	Protein kinase superfamily protein
NR	XP_003543284.1	0	PREDICTED: probable leucine-rich repeat receptor-like serine/threonine-protein kinase At5g15730-like isoform X1 [Glycine max]
COG	YP_007779934.1	4.00E-24	Serine/threonine protein kinase [Roseburia intestinalis XB6B4]
Swissprot	tr\|Q9LFV3\|Y5157_ARATH	4.00E-118	Probable leucine-rich repeat receptor-like serine/threonine-protein kinase At5g15730
trEMBL	tr\|I1M3G7\|I1M3G7_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G36140.4}

Sequence

Transcript Sequence

>Glyur000045s00009964.1
CCCATAGTTACTTTTTATTAAATGCAAATTCTATTATTTCTATTAGTATTATTTTTTAGCGGCGACTTTGCCAATTTTGTGTTTGTTTGTTGTTGTTATTCTCTTGTCTGTACAGTAAGTAATGTACACGCACTTTTATTTTGTTCTTCTGAAACTGCAACTCTCTCTCTCTCTCTCTCATTCTGTTCTCTCAAGTCTCATATCTGTTCTTGGAATCTCATTCAGAATCCTTTCCCTTTTTATTCCTCCTCCCCACTACCTCACTTCTGGCAACGCTCCCGCAAAACACGTAACTGGCTTCAGTTCAGCTTTTTCTTAAAATAAAAAACTTTACTTTTGGTGTGAAATGGTTTGTCAATGGATTGGATGATCAATAGGGAATAGCAGAAAAAGAAAAGAGGGAGAGAGAGATGAAAGAGGAGTCTACAGGACTAATTATTGGGATTTCCATAGGTGTGGTGATTGGAGTTGTTTTGGCAATCTCTGCATTGTTCTGTCTTAGATACCATCGGAAGCGATCGCAGATAGGCAATAGCAGTTCCCGGAGGGCAGCTACCATACCTATACGTGCAAATGGTGCNGATTCTTGTACTATTCTGTCAGACTCAACCTTAGGTCCTGATTCACCTGTGAGGTCTGGACGTAATGGCATGTCCTTCTGGATTGATGGGTTCAAGAAGAGTAACATGGTTTCTGCATCTGGAATNCCAGAATATTCATACAAGGACTTGCAAAAGGCAACATGCAATTTTACAACACTCATAGGACAAGGTGCATTTGGTCCTGTTTATAAAGCTCAGATGTCTACTGGCGAGACTGTTGCAGTTAAAGTTCTTGCAACTAATTCTAAACAAGGGGAGAAAGAATTTCAGACAGAGGTTATGTTGTTGGGAAGGTTACACCACAGAAACCTGGTCAATTTGGTTGGATATTGTGCAGAAAAGGGGCAACATATGCTTGTATATGTCTACATGAGTAAAGGCAGCTTGGCTTCCCACTTGTATAGTGAAGAGAATGGGACACTAGGCTGGGATTTGAGGGTTCATATAGCTTTAGATGTAGCACGTGGCGTGGAGTATCTTCATGATGGGGCAGTTCCTCCTGTGATCCACCGAGATATCAAATCTTCCAATATTCTCTTGGACCAGTCCATGCGAGCCAGGGTTGCTGATTTTGGACTTTCAAGAGAAGAGATGGTGGATAAACATGCAGCTATTCGGGGTACTTTCGGCTATCTTGACCCTGAGTATATATCTTCAGGGACATTCACCAAGAAAAGTGATGTATACAGTTTTGGGGTGTTGCTCTTTGAACTTATAGCAGGCCGAAATCCTCAGCAGGGTCTTATGGAATATGTTGAGCTCGGGAAAGTTGGTTGGGAGGAGATTGTTGATTCTAGGCTTGAGGGAAAATGTGACTTCCAAGAGCTCAATGAAGTGGCAGCACTTGCCTACAAATGCATCAACCGTGCCCCAAAGAAGCGACCTTCCATGAGGGACATAGTGCAAGTGTTGACACGGATCCTCAAATCAAGGCACCAAAGGAATCATCATCATCACAACAAATCCCTTTCAGCCACAGCAGAGGAAGTTTCAGTTGATGTTGATCAGCTAGAAACCAAGTCTTCTGTTACTGACCACCGAAGAGAAGAATCCATAGATAGTGCAGCTGACATGTATGATGTGTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00045	169691	174589	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.3.3

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000045s00009964.1	PF07714.12	Pkinase_Tyr	114	368	2.60E-54

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.568
SRR1783600	control	11.659
SRR1783602	moderate drought stress	10.132
SRR1811619	moderate drought stress	10.201

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	13.898
DRR006520	Root Summer glycyrrhizin high producing strain	13.584
DRR006521	Root Winter glycyrrhizin high producing strain	17.402
DRR006522	Root Winter glycyrrhizin high producing strain	16.848
DRR006523	Root Summer glycyrrhizin low producing strain	14.892
DRR006524	Root Summer glycyrrhizin low producing strain	15.808
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.918
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.519

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	45.349
SRR2868004	Drought Stress (root)	67.978
SRR2967015	Control (root)	57.000

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	23.369
SRR9715740	Leaf	16.988
SRR9715741	Leaf	27.259
SRR9715739	Root	11.718
SRR9715742	Root	13.258
SRR9715743	Root	12.406

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	34.280
SRR8749028	MeJA induced 9h	56.086
SRR8749029	MeJA induced 9h	34.151
SRR8749030	Uninduced	103.417
SRR8749031	Uninduced	92.856
SRR8749032	Uninduced	50.818

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	35.795
SRR8400027	Control - Root	33.057