Gene detail information of Glyur000045s00009962 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G54600.1 | 2.00E-62 | Translation protein SH3-like family protein |
| NR | KHN36744.1 | 1.85E-111 | 50S ribosomal protein L24, chloroplastic [Glycine soja] |
| COG | YP_007073409.1 | 7.00E-40 | 50S ribosomal protein L24 [Leptolyngbya sp. PCC 7376] |
| Swissprot | tr|P11893|RK24_PEA | 2.00E-102 | 50S ribosomal protein L24, chloroplastic (Precursor) |
| trEMBL | tr|C6T0A2|C6T0A2_SOYBN | 1.00E-111 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G36150.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00045 | 156899 | 160300 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000045s00009962.1 | PF00467.24 | KOW | 70 | 101 | 6.20E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 15.040 |
| SRR1783600 | control | 14.778 |
| SRR1783602 | moderate drought stress | 13.246 |
| SRR1811619 | moderate drought stress | 13.198 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 15.497 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 15.186 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 12.187 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 11.794 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 19.940 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 19.698 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 104.853 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 104.178 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 23.695 |
| SRR2868004 | Drought Stress (root) | 16.781 |
| SRR2967015 | Control (root) | 20.389 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 172.823 |
| SRR9715740 | Leaf | 241.634 |
| SRR9715741 | Leaf | 121.586 |
| SRR9715739 | Root | 2.959 |
| SRR9715742 | Root | 8.125 |
| SRR9715743 | Root | 8.448 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 38.948 |
| SRR8749028 | MeJA induced 9h | 33.131 |
| SRR8749029 | MeJA induced 9h | 37.646 |
| SRR8749030 | Uninduced | 40.287 |
| SRR8749031 | Uninduced | 22.472 |
| SRR8749032 | Uninduced | 30.245 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 35.943 |
| SRR8400027 | Control - Root | 31.712 |