Gene detail

Gene detail information of Glyur000045s00009956

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G54650.2	2.00E-171	formin homology5
NR	KHN27983.1	0	Formin-like protein 5 [Glycine soja]
Swissprot	tr\|Q94B77\|FH5_ARATH	0	Formin-like protein 5
trEMBL	tr\|G7IHC9\|G7IHC9_MEDTR	0	Formin-like protein {ECO:0000256\|RuleBase:RU361260}

Sequence

Transcript Sequence

>Glyur000045s00009956.1
ATTACATGTAATTGAACGTGATCCAATTCAACAATAAATTGACAACTTTGGAGAGGGTATNGGATTTATTTATTTTTCTAGTTTTGTTCATTATGTATGATCCTAGGATTCTTTGATTCTTCCTGCTGTATCCTTGGTGGGGATTGTGGAATATTTGTGCTTGGAAACCGGTGATAGTGGTAATCTGTAGAGGGATAGAACTTGGGTTGGCGGTGGATGATGAAAAATGACATTTTTTTTGGGTTGATGGAGCACAATGTAGAGACTTGTGTGGTTGTTAGGTTTAGGCCTTGATGTTACAAAAAGCATATGAAGCACAATGGCAATTCAACAATATATGGGTGTCATAAAGGCTANCTTTTGCATTGTTTTGGTTCTTAATATTGTGGTAGCCTTCAGCATTGAAGAAGAGAAGGAAACACAAGAAGAATTCCTAAGCCAACTATTTGATCCTGCATCTGGACTGTTAGATGAGGACACGGCAGAGGCACTATGGATCACTTGCATGGAAGATTTGATTGATATAAAGAAAGAAACTAGAGATCATGGCTTATGCCTCCCAGAGGAATCACCCGGTATCACCAATGACATTAGTTCAGAAATTGGATCAATAGCAAAAGAAAACATCCAAAGATTGATTAGAACTTGCCATCCTCAGTTGAAGGAAAATTTTCTTCACTGTTTGAGAAAAAGCAATATTCCATTCCAAGTCTCTCGAGAAGAGGGTGAATCCAAGAACTGGAATGCCGCTTATATGGGATCACTTTCTTCCAGAAGATANTTGGGTCATGTTTTCCCTCAACACATATCAGAGAAAAAAGATAATAAAGATAACGATGGTGATGATGGGTCATCTACAAAAGATAGTGGTCGTGATTCTGATAAAAAATCAAAAAAAAAGTCCTCTAAGTCTTCTAAGAGTAAAAATCATAAAAAAGCAGTTTATCGTGCCATAGCTATAACTGCATTGGTGACATTTGTAGGTGCATTACTAATCTTTCTATGTTGTTGCCGGTGNTGTGGGAGTGGTAGAGTTAGACAAACTGATGAGAGGCCCCTTCTCAGCGTGAGCATGAGTTCTTCTTCCAACAATAACCAGTTTAAAAATTCACTAAAAGAGGAGAAACATGGATTTCAATCACCAAGTAATATTTTGGTTAGTGACATGAAGAACTCAGAGGAAGAAAGCCAAGTGGTAGTAGGTGTTGCTGCTGCAAGACCATCATTTGAACTAAAACCTCCTCCTGGCAGGGTAGGAGGAGCTGGAATCCCTCCTTTGAAACCTCCTCCTGGTAGGCATGATCCTCTTCCACCCGAGCCACCATCAGTTAAGCCTTCTAACAATGTTATTGATCCTTCTCCACCACCTCCTCCTCCTCCTCCTGCACAATCAGGGCCTTGTAGTGGTGGCCCTCCACCTCCACAACTTCGCAGTAACGGTCCTAGGCCTCCTCCACCACCACCACCTAGTGCCAAACCTGGTCCTCGTCCACCACCACCTCCTAAGGGTGGTGTAGGTCCTCCACGAGCTCCTCCCCCATTTGGCAAAAAAGGGGCTAAACCTTTGGCTAGTGGACCAAAGGCTCAAGGGAAGGTTGAAGCTGAATCAGAATTAGGTGAGGCTGGTGCTCCTAAGACCAAGTTAAAGCCTTTTTTCTGGGATAAGGTTCAAGCCAACTCAGATCAAAGTATGGTTTGGAATCAACTAAAAGCAGGATCATTCCAGTTTAATGAAGAAATGATGGAAACGCTTTTTGGCTATAGTGCTCCACCGGGGGATAAAAACAAAGGCGCACAGAAGAAAAACTCTTCCTCCCATAATGCTTCACCTCAGTATATCCAGATCATTGACTCAAAGAAAGCACAAAATTTATCAATTCTGTTGCGAGCATTGAATGTGACACTGGAAGAAGTGTCTGATGCACTTCTTGAAGGAAATGAGCTCCCTCCAGAGTTTCTTCAAACCTTGTTGAAGATGGCACCAACATCAGAAGAAGAACTTAAGCTTAGACTTTTCAGTGGAAACCTTTCCCAACTTGGACCCGCCGATCGGTTCCTAAAAGCCCTAGTTGAAATTCCATTTGCTTTTAAACGATTGGAAGCACTGCTTTACATGGGTACTCTTCAAGAGGATCTCACTACTACCCGGGAGTCTTTTGTAACTTTAGAGGTTGCTTGTAAGGAACTAAGAAGCAGTCGACTGTTCCTCAAGCTTCTTGAAGCAGTTCTCAAAACCGGCAACCGTATGAATGATGGGACATTTCGCGGTGGTGCACTTGCATTCAAACTTGATACACTACTAAAACTGTCTGATGTAAAAGGAGTTGATGGAAAAACTACCCTGTTACACTTTGTTGTTCAAGAGATAATTCGCACCGAGGGCATAAGAGCTGCGCGTATGAAAAAAGAGAGCCTNAGTTTCTCNAGCATAAAAACTGATGACCTTCTAGAGGACATTGGTAATGAATCAGAAGATCACTATCGTGAACTTGGTCTTCAAGTGGTTTCACGTTTNAGCAGTGAACTCGAGAATGTGAAGAAAGCGGCAGCTCTAGATGCTGATGGCTTAACAGGAACAACTGCTAGACTAGGATATGGTCTCATAAAAACAAGAGACTTTGTAAACAAAGACATGAATGACACAGAAGGAGGTGATAAAGGGTTTCATGAGACGGTTAAGAGTTTTGTGGAGAAAGCTGANGCAGATGTCACGAGTCTTTTGGAGGAAGAGAAGAAAATAATGGCTCTGGTGAAGAGCACTGGTGATTACTTTCATGGGAATTCTGGAAGGGATGAAGGGTTGAGATTGTTTGTAATAGTACGTGACTTCTTAATAATGTTGGATAAGGTATGTAAGGAGATTCAAAGAGCACCAAAGAATAAGCCAACAAAAACAGTGAAAAATATTGATACTTCTAGTAGTTCTAAAGGTTCATCTTCCTCGGAACCTCATCCTCCACCCCCTGATTTTCGCCAGCGGCTTTTTCCGGCAATCGCGGATAGGAGGGCGGATGACTTTAGTTCAGATGAAGAGAGTCCATAGGTTCAAGTTGGAAGTAGTGGTGTAACTATTTTTTTTTCTTTGGCCATGTCCTTACTAACATGTCCTTGTATAGCATTGTTAGAGAGACATGACTAATTACTTGCTTACTTGTCTAATTTTGAAGGGGTTGATCGTGTTAAGTTGATCATTGATAATTTTAGTGCATGTAGAGTCATGGTTTTGTTGGTTTTCCTTTTTCAGAGGAATGATTAATTAGATTGTGTCTCTTCTTGAGTGGTTCAAGTGAAATAGCATTAATTCTCTTCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00045	109024	114489	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000045s00009956.1	PF02181.18	FH2	436	841	2.90E-108

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.774
SRR1783600	control	5.692
SRR1783602	moderate drought stress	2.937
SRR1811619	moderate drought stress	2.954

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.652
DRR006520	Root Summer glycyrrhizin high producing strain	2.881
DRR006521	Root Winter glycyrrhizin high producing strain	0.466
DRR006522	Root Winter glycyrrhizin high producing strain	0.455
DRR006523	Root Summer glycyrrhizin low producing strain	5.766
DRR006524	Root Summer glycyrrhizin low producing strain	5.576
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.195
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.193

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.061
SRR2868004	Drought Stress (root)	0.089
SRR2967015	Control (root)	0.091

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.101
SRR9715740	Leaf	0.211
SRR9715741	Leaf	0.178
SRR9715739	Root	0.789
SRR9715742	Root	2.142
SRR9715743	Root	1.975

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.047
SRR8749028	MeJA induced 9h	0.024
SRR8749029	MeJA induced 9h	0.060
SRR8749030	Uninduced	0.053
SRR8749031	Uninduced	0.069
SRR8749032	Uninduced	0.060

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.802
SRR8400027	Control - Root	2.173