Gene detail

Gene detail information of Glyur000045s00009955

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G54660.1	1.00E-43	HSP20-like chaperones superfamily protein
NR	XP_003540425.1	6.64E-98	PREDICTED: 21.7 kDa class VI heat shock protein-like [Glycine max]
Swissprot	tr\|Q9FIT9\|HS217_ARATH	1.00E-53	21.7 kDa class VI heat shock protein
trEMBL	tr\|I1LUS1\|I1LUS1_SOYBN	2.00E-98	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA12G34340.1}

Sequence

Transcript Sequence

>Glyur000045s00009955.1
ATGGCAAAAATCCTTATCTTCACTTATCATGTGCAAGCAATCTACAACAGGAAAGCATCAATTCTCCATGCCTGTCATGCACGTGACAAACAGCTAAACAAGTCATCAGCTGAAAAGCATCTCGTGACAGAAAAATTGATGCTTGTTGTTTGCGCTCAATCTGTGAAAACAATGGCTTCTCCTGCAATATAAGAGAAAAGGCCACAAAAACTCTCTCACACCAAAGCCTCACAAATTTTGCTCAGTCTTTCTGAGAAGAAATGTCTAGTTCTAACAAGAGGGTTGAGGTTCAAACAGATGATCAAACTCCACATAAATGGTGTGTTTCATTGGGAGAAGAAACTTTCAAGAGATTCTTCAGCCAGACTAATCCAACAGTGCATAAGGTTTTTGGTGATGGGTCACTTTTCAGTCCAATGTTGTTTGGGAAGTTCTTTGATCCTTCTGATGCTTTCCCTCTATGGGAGTTTGAGTCAGATATCTTGTTATCTCATCTAAGGAGCTCCAGCTCCAGCCAAGGCACTGTGGATTGGCGCCAGACAGATGAAGGCTATGTATTAAAAGCTGAAATACCAGGAACTGGGAGAAATAACATTCAAGTCCACGTTGATAAAGGGAAAGTAGTGGAAATTAGTGGACAGTGGAAGCAGCAAAGAGACTCAAAGGCAAATGATTGGAGGTGTGGCCATTGGTGGGAACACGGATATGTAAGAAGGCTTGAGATGCCAGAGGATGCAGATTGGANGAACATAGAAGCTTACATATACAATGAAACATTTTTAGAAATACGGATACCAAAGAGCCAACATGGTTGTGATCTTCCTCAGGGAAAGGCTGTGGCTTGAGCTTGAATAACAGGTAGAGCTACTAGAGTGAGTTTGTTACCATCTAGTAGCAACTTGTGTGCCAATTGATACCAAACATTTAACAAAGTTATAACTCTTTTAAGTCTCAACCTAATATCAGTAAGTATGAGCAGGCCTTCTGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00045	104620	106804	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000045s00009955.2	PF00011.16	HSP20	76	152	5.00E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.274
SRR1783600	control	4.300
SRR1783602	moderate drought stress	2.612
SRR1811619	moderate drought stress	2.519

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.834
DRR006520	Root Summer glycyrrhizin high producing strain	6.489
DRR006521	Root Winter glycyrrhizin high producing strain	2.118
DRR006522	Root Winter glycyrrhizin high producing strain	2.076
DRR006523	Root Summer glycyrrhizin low producing strain	10.586
DRR006524	Root Summer glycyrrhizin low producing strain	10.618
DRR006525	Leaf Summer glycyrrhizin high producing strain	20.764
DRR006526	Leaf Summer glycyrrhizin high producing strain	20.788

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	26.907
SRR2868004	Drought Stress (root)	32.345
SRR2967015	Control (root)	30.737

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	15.930
SRR9715740	Leaf	24.993
SRR9715741	Leaf	23.530
SRR9715739	Root	0.613
SRR9715742	Root	5.578
SRR9715743	Root	4.548

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.072
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.123
SRR8749030	Uninduced	0.096
SRR8749031	Uninduced	0.139
SRR8749032	Uninduced	0.021

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.155
SRR8400027	Control - Root	9.605