Gene detail

Gene detail information of Glyur000045s00009952

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G01440.1	1.00E-60	PsbQ-like 1
NR	XP_003596609.1	5.56E-132	Oxygen-evolving enhancer protein 3-1 [Medicago truncatula]
Swissprot	tr\|Q9SGH4\|PQL2_ARATH	1.00E-74	PsbQ-like protein 2, chloroplastic (Precursor)
trEMBL	tr\|G7IHD6\|G7IHD6_MEDTR	2.00E-132	Oxygen-evolving enhancer protein {ECO:0000313\|EMBL:AES66860.1}

Sequence

Transcript Sequence

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00045	90421	91824	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0015979 photosynthesis

cellular_component

GO:0009523 photosystem II

GO:0009654 photosystem II oxygen evolving complex

GO:0019898 extrinsic component of membrane

molecular_function
GO:0005509 calcium ion binding

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Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000045s00009952.1	PF05757.6	PsbQ	25	222	9.50E-48

Expression pattern

SRA Experiment	Description	TPM
SRR1783599	control	0.080
SRR1783600	control	0.066
SRR1783602	moderate drought stress	0.041
SRR1811619	moderate drought stress	0.036

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.118
DRR006520	Root Summer glycyrrhizin high producing strain	0.116
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.003
DRR006523	Root Summer glycyrrhizin low producing strain	0.120
DRR006524	Root Summer glycyrrhizin low producing strain	0.120
DRR006525	Leaf Summer glycyrrhizin high producing strain	120.281
DRR006526	Leaf Summer glycyrrhizin high producing strain	119.064

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.274
SRR2868004	Drought Stress (root)	0.316
SRR2967015	Control (root)	0.056

SRA Experiment	Description	TPM
SRR9715738	Leaf	42.070
SRR9715740	Leaf	73.799
SRR9715741	Leaf	22.100
SRR9715739	Root	0.000
SRR9715742	Root	0.000
SRR9715743	Root	0.067

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.133
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.164
SRR8749032	Uninduced	0.186

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.439
SRR8400027	Control - Root	0.393