Gene detail information of Glyur000045s00009951 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G11530.1 | 1.00E-39 | C-terminal cysteine residue is changed to a serine 1 |
| NR | XP_003596610.1 | 4.38E-68 | Thioredoxin-like protein [Medicago truncatula] |
| COG | YP_003436641.1 | 8.00E-14 | thioredoxin [Ferroglobus placidus DSM 10642] |
| Swissprot | tr|Q8LDI5|CXXS1_ARATH | 1.00E-49 | Thioredoxin-like protein CXXS1 |
| trEMBL | tr|G7IHD7|G7IHD7_MEDTR | 2.00E-68 | Thioredoxin {ECO:0000256|PIRNR:PIRNR000077} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00045 | 85130 | 86499 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000045s00009951.1 | PF00085.15 | Thioredoxin | 17 | 114 | 5.30E-21 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 27.094 |
| SRR1783600 | control | 27.524 |
| SRR1783602 | moderate drought stress | 43.244 |
| SRR1811619 | moderate drought stress | 43.510 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.984 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.779 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.164 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.377 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.190 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.191 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.314 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.356 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 492.694 |
| SRR2868004 | Drought Stress (root) | 434.035 |
| SRR2967015 | Control (root) | 585.348 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 59.741 |
| SRR9715740 | Leaf | 64.730 |
| SRR9715741 | Leaf | 44.478 |
| SRR9715739 | Root | 44.392 |
| SRR9715742 | Root | 45.576 |
| SRR9715743 | Root | 43.220 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.446 |
| SRR8749028 | MeJA induced 9h | 5.153 |
| SRR8749029 | MeJA induced 9h | 1.492 |
| SRR8749030 | Uninduced | 21.777 |
| SRR8749031 | Uninduced | 10.516 |
| SRR8749032 | Uninduced | 41.165 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 239.660 |
| SRR8400027 | Control - Root | 159.277 |