Gene detail information of Glyur000045s00009948.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G54690.1 | 0 | galacturonosyltransferase 12 |
| NR | XP_003543290.1 | 0 | PREDICTED: probable galacturonosyltransferase 12-like [Glycine max] |
| COG | YP_003539230.1 | 5.00E-08 | glycosyl transferase family protein [Erwinia amylovora ATCC 49946] |
| Swissprot | tr|Q9FH36|GAUTC_ARATH | 0 | Probable galacturonosyltransferase 12 |
| trEMBL | tr|I1M3I1|I1M3I1_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G36280.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00045 | 69764 | 73479 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT8 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000045s00009948.1 | PF01501.15 | Glyco_transf_8 | 206 | 502 | 1.60E-69 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.595 |
| SRR1783600 | control | 2.665 |
| SRR1783602 | moderate drought stress | 1.675 |
| SRR1811619 | moderate drought stress | 1.683 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.270 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.319 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.108 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.110 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.981 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.942 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 14.633 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 14.540 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 16.609 |
| SRR2868004 | Drought Stress (root) | 8.464 |
| SRR2967015 | Control (root) | 10.020 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 8.828 |
| SRR9715740 | Leaf | 6.525 |
| SRR9715741 | Leaf | 5.743 |
| SRR9715739 | Root | 0.774 |
| SRR9715742 | Root | 5.684 |
| SRR9715743 | Root | 4.972 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.299 |
| SRR8749028 | MeJA induced 9h | 0.297 |
| SRR8749029 | MeJA induced 9h | 0.093 |
| SRR8749030 | Uninduced | 0.340 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.018 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.124 |
| SRR8400027 | Control - Root | 8.375 |