Gene detail information of Glyur000045s00009946 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G54730.1 | 1.00E-145 | homolog of yeast autophagy 18 (ATG18) F |
| NR | XP_003596621.1 | 0 | Autophagy-related protein [Medicago truncatula] |
| Swissprot | tr|Q9FH32|AT18F_ARATH | 3.00E-177 | Autophagy-related protein 18f |
| trEMBL | tr|I1M3I2|I1M3I2_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G36290.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00045 | 55115 | 62503 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000045s00009946.1 | PF00400.27 | WD40 | 397 | 425 | 7.20E-05 |
| Glyur000045s00009946.1 | PF12490.3 | BCAS3 | 544 | 784 | 5.60E-65 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 11.839 |
| SRR1783600 | control | 11.881 |
| SRR1783602 | moderate drought stress | 16.345 |
| SRR1811619 | moderate drought stress | 16.312 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.591 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 12.234 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 16.695 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 16.458 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 13.247 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 13.142 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.992 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.581 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 18.273 |
| SRR2868004 | Drought Stress (root) | 29.809 |
| SRR2967015 | Control (root) | 31.417 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 17.542 |
| SRR9715740 | Leaf | 16.461 |
| SRR9715741 | Leaf | 19.674 |
| SRR9715739 | Root | 2.943 |
| SRR9715742 | Root | 16.405 |
| SRR9715743 | Root | 14.917 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 20.582 |
| SRR8749028 | MeJA induced 9h | 64.584 |
| SRR8749029 | MeJA induced 9h | 44.119 |
| SRR8749030 | Uninduced | 53.395 |
| SRR8749031 | Uninduced | 101.772 |
| SRR8749032 | Uninduced | 71.033 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 22.571 |
| SRR8400027 | Control - Root | 23.346 |