Gene detail information of Glyur000045s00009940 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G01990.1 | 6.00E-27 | ACT domain repeat 6 |
| NR | ACJ84936.1 | 3.42E-59 | unknown [Medicago truncatula] |
| Swissprot | tr|Q9SGA0|ACR6_ARATH | 6.00E-31 | ACT domain-containing protein ACR6 {ECO:0000305} |
| trEMBL | tr|B7FJK7|B7FJK7_MEDTR | 1.00E-59 | Putative uncharacterized protein {ECO:0000313|EMBL:ACJ84936.1} (Fragment) |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00045 | 4596 | 6075 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000045s00009940.1 | PF01842.20 | ACT | 63 | 108 | 2.00E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.441 |
| SRR1783600 | control | 0.504 |
| SRR1783602 | moderate drought stress | 0.895 |
| SRR1811619 | moderate drought stress | 0.810 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.715 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.557 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.801 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.996 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.144 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.793 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.656 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.201 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 11.968 |
| SRR2868004 | Drought Stress (root) | 13.593 |
| SRR2967015 | Control (root) | 15.954 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.047 |
| SRR9715740 | Leaf | 0.232 |
| SRR9715741 | Leaf | 0.183 |
| SRR9715739 | Root | 0.459 |
| SRR9715742 | Root | 0.403 |
| SRR9715743 | Root | 0.673 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.903 |
| SRR8749028 | MeJA induced 9h | 6.232 |
| SRR8749029 | MeJA induced 9h | 5.098 |
| SRR8749030 | Uninduced | 7.910 |
| SRR8749031 | Uninduced | 5.031 |
| SRR8749032 | Uninduced | 6.169 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.023 |
| SRR8400027 | Control - Root | 1.175 |