Gene detail

Gene detail information of Glyur000044s00005217

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G48380.1	3.00E-40	BAK1-interacting receptor-like kinase 1
NR	AES90509.2	2.07E-120	LRR receptor-like kinase family protein, putative [Medicago truncatula]
COG	YP_004579826.1	9.00E-13	hypothetical protein [Lacinutrix sp. 5H-3-7-4]
Swissprot	tr\|Q9ASS4\|Y5838_ARATH	5.00E-50	Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 (Precursor)
trEMBL	tr\|G7JSZ5\|G7JSZ5_MEDTR	8.00E-121	LRR receptor-like kinase family protein, putative {ECO:0000313\|EMBL:AES90509.2}

Sequence

Transcript Sequence

>Glyur000044s00005217.1
ATGGCTTTTCAAATAAAAAGGGACATTCTCTTCCAGGCCTTCTTGTGCTCTTTGTTCAGCATCTTAATGACAAGCCAAGGTGTTGTTACTGATATCTTCTGTTTAAAATCCGTTAAGAATTCCTTGGAAGACCCGTCAAATTTCTTATCTTCAAGCTGGGACTTCAACGACAATACCGAAGGTAACATATGTAAATTCAATGGTGTTGAATGTTGGCATCCTGATGAGAATAGAGTACTAAATCTCAAACTATCTAACATGGGGCTGAAGGGCCAGTTTCCAAGGGGCCTTCTGAATTGCTCCTCGATGACAGGCTTAGACCTTTCACTGAACGAGATTTCAGGACCCATCCCATCTGATATATCAGGCATACTTACATTTGTTACCACCATTGATCTCTCAAATAACAAATTCACTGGTGAAATTCCGGCAGCTTTACCAAACTGCACTTACCTGAATGTTCTTAAACTTGACAACAACATGTTAAGCGGTCAAATCCCACAAGAATTCAGGCTGCTTCCCAGGCTCAAAGAGATTTCTTTTGCCAACAATCATTTGTCAGGGCCAGTGCCTGTGTTTGAGGAAGGGATTGTTTGTAATTATACCAACAATGATGGACTTTGTGGAGGGTCTTTGGCACCCTGCTCCGTGAGACATCACAGGTCCAACGAATTCCATCAATCATTCAAGGGTGGTCTTATTGTTGGTTTTGCTCTTTCATTGACTTGTTCTGTTATGGTTGCTTGTGTGTCCTACTCCAACTGTGTACCTTGCGTGCAACTGAGGAAGAAAAGAAACACTAAAGAGCTGGGCAAGTATATTTGCTTCACCATAAGGAGGAGGACACGAAGGGTTGCTAACCAGATGTACGAATTGCTACATATGCAGCTGGTAGAGAAAGAAAGCAAAGAGATCTCTGTACTATTGGAAAGATTGACTTCCACAATCAGGTTGGAAGAACTCCATGAGAATTTTGAACCCAAGATATCCAATTTTGGAGAGGCTAAGTTTATGAATCCGAATAATTGGAAGAAGGATGTCTATGATTTCGGAAGTGTGCTTTTTGAACTGATTACAGGGGAAACATATGACAATTGTCCCGTTCATCCACCACTACTAATCTCTGTGTTTTCAAACTTTTATGATGCAATTGATAAATCTCTGATTGGGGAAGGATTTGAAAACGAAGTATGTGCTCTCCTAAAGATTGCTTGTGAGTGTGTTCAGCCTTTACCAGAACAAAGGCCAACAATGTTTGAAGTTTACAACAATATGAGCAATGTGGAGGAAGGGACGACATGGATCCATTTTTTATATCTTCTATTGTCTACCCATACAACTTACCAAGAAGAGGAAAAAGAAGAAAACAAGACAGATTCGCAAATTGCCACGTCAGGTCTTAAAACAGGAAAAGATCAAAGAGAAACAAAAGAAAGTCAGACAGGCATTGATAAAGAAGCCAGTGCAGTTGCTAGAGAAAAGAATACAGATCAATAAAGTTGGACGGTTGACNTGTAGAATGAACTTCACAAAACTCTGTGATGCAACCAAACACTTCAGCGAGGAAAGTGTCATTGGGGAGGGAGTGATTGGGATAATGTACAAGGCAACACTTGCCAACAGTTGGTTCCTGGCAGTTAAAAGACTATATGATTCCGAGTTGTTTATAAAAACATTCGAGTTAGAAATAATGATTCTGGGGAAATACAATCACAGAAACATAGTTCCCCTGATCGGTTTCTGCATGGAAGAAGAAAGAAATGAGAGGATTCTAGTGTATGAATACATGTCAAATGGAAGGCTTTCTGATTGGCTGAATGATGATACGTACCACGATATTAGGTTGGGCTAGGGTTGTTAAAATTGCACTTGGGGTAGCAAGAGGTTTATCTTGCCTCCATCATAGCTTAAATATGGTTCATCTCAATATCAGCTCCAAGTGTATCCTGCTAGGAAAAAATTTTGAGCCAAAAATATCCAATTTTGGAGGGTCCATGTTTATGAATCATCATGAGGTGAGAGAAAACGAGAAAAAGGATGTGTATGACTTTGGAATTTTGCTTTTGGAGCTGATTAAGGGGAAGAAATTTGGCCAAATACGTGAGAGTGATCACTGTTTTAGCAACAATACTAATACTAATACTAATAATGAAGTTCCTTTTGCCACTTACACATATCCTAATCCTACGAATCTNTTGGACGACCCTTCTGGCTTCTATGATGCCGTGGATAAATCTCTAAACAAGATAGAGTTTGAAGATGAGGTATCTGCTCTTCTCAGAGTTGCGTGTGACTGTGTTCATCCTTTTCCTGAGCAAAGGCCAACGATGCTAGAAGTGTACANCAAGATGGGGAACATATGGGAGAGAGATGGGATCTGTGAAGATTCTTTGACCTCTGATCCATATGATTATGTTTCTACTACCTTTGGTAGTAACGAATTTGTCTAGCTACAATCTTCAATAAAAGAAAATTAGAAATTAGAAATTAGCAGCACTGACACCAACTTGTTACGATCTTTTTTCTTTATTAGACCTCACCTTGTTGAAGGCCGTTCTCTATCTTATAGGTTGAGCATACG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00044	490102	497955	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.12.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005515 protein binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000044s00005217.1	PF08263.7	LRRNT_2	31	72	4.80E-05
Glyur000044s00005217.1	PF13855.1	LRR_8	129	186	5.60E-07
Glyur000044s00005217.2	PF07714.12	Pkinase_Tyr	16	160	3.50E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.016
SRR1811619	moderate drought stress	0.029

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.074
DRR006520	Root Summer glycyrrhizin high producing strain	0.056
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.048
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.327
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.095

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.690
SRR2868004	Drought Stress (root)	1.536
SRR2967015	Control (root)	1.628

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	14.241
SRR9715740	Leaf	5.993
SRR9715741	Leaf	15.035
SRR9715739	Root	0.010
SRR9715742	Root	0.444
SRR9715743	Root	0.097

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.310
SRR8749028	MeJA induced 9h	0.208
SRR8749029	MeJA induced 9h	0.146
SRR8749030	Uninduced	0.036
SRR8749031	Uninduced	0.107
SRR8749032	Uninduced	0.043

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.260
SRR8400027	Control - Root	0.474