Gene detail

Gene detail information of Glyur000044s00005208

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G21320.1	2.00E-124	Aldolase-type TIM barrel family protein
NR	KEH31184.1	0	(2R)-phospho-3-sulfolactate synthase ComA [Medicago truncatula]
COG	YP_003290987.1	1.00E-76	(2R)-phospho-3-sulfolactate synthase ComA [Rhodothermus marinus DSM 4252]
trEMBL	tr\|A0A072UN08\|A0A072UN08_MEDTR	0	(2R)-phospho-3-sulfolactate synthase ComA {ECO:0000313\|EMBL:KEH31184.1}

Sequence

Transcript Sequence

>Glyur000044s00005208.1
CTGGGTTTGAATCTGTTTTATTTGGAAGGATTTTGAACTATTTTTCAGTTTGATTATTTTTTACACAAATGACCCAACAAAATTTGATATTACCTAAGAGACCCTGAGTTTACCTGCAAACCAGTACTATTTAGCCTCTCACTGGTGAGGGGCATTTTTGCTGGTCCATGCTAGCATTCACNTACAGGTACTACCGTTTTCTAGAAAGAACTCCATCCTTCTGTTTTCCTCTGCAAGCTACGAGAGACAAGAAAGAACAACCGGTCATTTGGAGTTTAGGGAGAGAGAAAGAGAAAACCAAAACTATTTCGATTCCCTTTCCGTCTCAATTCTCCTCACTCACCTCATAACTAGCAGTAACGATGTCGGCATACCGATGGAAAAGCTTCGAGGAGAACGAGGACCGCCCCTCCAAGCCTCGCCGCTATGGCGTCACCGAGATGAGAAGCCCCCATTACTCTCTCTTCAGTCACAACGTTCTTCAGGATATTTTTGAGTCTATGGGAGATTATGTTGATGGGTTGAAGTTTTCTGGAGGCTCTCACAGCTTGATGCCAAAACCTTTTATCAAACAGGTGATTGACATGGCCCATCAGCATGATGTTTATGTTAGCACTGGTGACTGGGCTGAACANACCATTCGCAAAGGTCCATCAGGTTTCAAAGACTATGTGCAGGAATGCAAGGAATTGGGGTTTGACACAGTTGAGCTGAATGCGGGTTCCCTTGGAGTTCCTGAAGAAACCCTTTTGAGATTTGTTCGCTTGGTCAAAAGTGGTGGTCTCAAAGCTAAACCTCATTTTGAAGTGAAGTTTAATGAGTCTGATATTCCCAAAGGTGGTGACAGGGCTTATGGGGCTTATATTCCNCCAGCACCTAGATCATTTGAATTAGTAGAAGATGTGGATCTCTTGATTAGAAGGGCTGAGAGGTGTTTAGAAGCGGGTGCAGACATGATAATGATTGATGCTGATGATGTCTGCAAACATGCTGATAATATGCGCGCGGATATTATTGCAAAGATCATAGGGCGCCTTGGTATTGAGAAGACTATGTTTGAGGCATCAAATCAGAGAGCATCCGAATGGTTTATCAAACAATATGGTCCAAAGGTGAACCTTTTTATTGATCACTCGCACGTGGTGGATGTGGAGTGCCTCCGAGGACGCAACTTGGGTAGAAATCATGCTTCTGTCCTCGGTTCTTCATTTTTCCTGTTCTGAAGTGAATTTGTATAGCACCCTGTGGGATTCATTGACTTATGTAAAAGGCTTGTGTTGTATGTTTCCTTCAATGAGCCAAGATAGAAAATTAAAATGGAGAGATTGAANTAAATGAATGTAACA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00044	457002	459542	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0019295 coenzyme M biosynthetic process

molecular_function
GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000044s00005208.1	PF02679.10	ComA	11	271	2.80E-80

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	16.186
SRR1783600	control	15.971
SRR1783602	moderate drought stress	42.591
SRR1811619	moderate drought stress	42.391

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	42.291
DRR006520	Root Summer glycyrrhizin high producing strain	41.850
DRR006521	Root Winter glycyrrhizin high producing strain	123.337
DRR006522	Root Winter glycyrrhizin high producing strain	120.142
DRR006523	Root Summer glycyrrhizin low producing strain	22.826
DRR006524	Root Summer glycyrrhizin low producing strain	23.541
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.418
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.391

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	12.995
SRR2868004	Drought Stress (root)	12.707
SRR2967015	Control (root)	11.691

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.026
SRR9715740	Leaf	8.513
SRR9715741	Leaf	8.255
SRR9715739	Root	14.155
SRR9715742	Root	24.569
SRR9715743	Root	21.455

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	18.290
SRR8749028	MeJA induced 9h	18.701
SRR8749029	MeJA induced 9h	25.466
SRR8749030	Uninduced	10.412
SRR8749031	Uninduced	7.521
SRR8749032	Uninduced	14.380

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	43.761
SRR8400027	Control - Root	47.546