Gene detail

Gene detail information of Glyur000044s00005205

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G61720.1	9.00E-117	NAD(P)-binding Rossmann-fold superfamily protein
NR	AEF14421.1	0	anthocyanidin reductase [Onobrychis viciifolia]
COG	YP_005324468.1	4.00E-42	NAD-dependent epimerase/dehydratase [Saprospira grandis str. Lewin]
Swissprot	tr\|Q9SEV0\|BAN_ARATH	3.00E-146	Anthocyanidin reductase
trEMBL	tr\|K9JZ71\|K9JZ71_ONOVI	0	Anthocyanidin reductase {ECO:0000313\|EMBL:AEF14421.1}

Sequence

Transcript Sequence

>Glyur000044s00005205.1
ATTCAGTTATGAAACATTTTAAGAAGCAAACAACTCAACTCAACTCAACTCAACTCTGCCTCTTCTCTTCTCTTCTCTCAGTTACATTAAAGTAACTAATAACTATTCATTCATAGTACTATAACTTTCGCCACTTTGGAGTGAGAAAGAGAGTACACAAACATGGCCAGTCCTAGTATCGAACAAATTGGAAAGAAGAAGGCATGTGTGATCGGTGGCACTGGGTTCATGGCATCTTTGCTCATCAAACAGTTGCTTCAAAAGGGTTATGCTGTCAATACCACTGTCAGAGACCCAGATAATCCCAAAAAGATATCTCACCTAGTGGAANTGCAAAGTTTAGGCGAACTGAAAATTGTTGGAGCAGATTTAACAGTTGAGGAAGATTTTGATGCCCCCATAGCAGGATGTGAACTCGTCTTCCAACTAGCTACACCTGTGAACTTTGCTTCTGAAGATCCTGAGAATGACATGATAAAGCCAGCAATCAAAGGCGTGTTGAATGTGCTGAAAGCATGTGCAAGAGCAAAGGAAGTCAAACGAGTGATCTTAACATCCTCAACAGCTGCTGTGACTATAAACGAAGTGAATGGAACAGGGCTGGTCATGGACGAAAGCAACTGGAGTGATGTTGAGTTCTTGAACACTGCAAAGCCACACAGTTGGGGATATCCTGCCTCCAAAGCATTAGCTGAGAAGGCTGCATGGGAATTTGCTGAAGAAAATCACANTGATCTCATCACTGTCATACCTACTTTGACAGCTGGTCCTTCTCTCACTCCAGATCTTCCAACCAGTGTTGGACTTGCCACCTCCCTCATAACAGGCAATGATTTCTTCTTCAAGGCTTTGAAAGGTATGCAATTGCTGTCAGGTTCGATATCAATCACTCACGTGGAGGATATTTGCCGGGCACATATATTTGTGGCGGAGAAAGAATCAGCTTCTGGTCGATACATTTGCTGTGCTCACAACACTAGTGTTCCTGAGCTTGCAAAGTTTCTCAGCAAACGATACCCTCAGTATAAAATTCCTACAGAATTTGATGATATCCCCACCAAGGCAAAGTTGATTATCTCTTCTGAGAAGCTTATCAAAGAAGGGTTCAGTTTCAATTATGGGATTGAAGAAATTTTTGACCAGACTCCTGTGGGAAAGAAGAAGGCATGTGTGATCGGTGGCACTGGGTTTATGGCATCTTTGCTGATCAAACATTTGCTTGAAAAGGGTTATGCTGTTAATACCACTGTTAGAGACCCAGATAATCCTAAAAAAATACCTCACCTCGTGGCACTGCAAAATTTGGGCGAACTGAAGATATTTGGAGCAGAATTAACAGTTGAAAAAGATTTTGATGCTCCCATAGCAGGCTGTGAACTTGTCTTCCAACTAGCTACACCTGTGAACTTTGCTTCTGAAGATCCTGAGAATGACATGATCAAGCCTGCAATCAAAGGCGTATTGAATGTGTTGAAAGCATGTGCAAGAGCAAAAGAAGTCAAACGAGTCATCTTAACATCTTCAGCAGCTGCTGTGACTATAAACGAACACAAAGGGACAGGTCTGGTTATGGATGAAAGCAACTGGACTGATGTTGAGTTCTTGAACACTGCAAAGCCACCTACTTGGGGCTATCCTGCCTCCAAAGCATTGGCTGAGAAGGCTGCATGGAAATTTGCCGAAGAAAATCACATTGATCTAATCACTGTGATACCTGCTCTGACAACTGGTCCTTCTCTCACTCCAGATATCCCATCCAGTGTTGGCCTTGCCACATCCCTTATAACAGGCAATGATTTCCTCATAAACGCTTTGAAAGGTATGCAGTTTCTGTCAGGTTCGATATCCATCACTCATGTGGAGGATATTTGCCGGGCACATATCTTTGTGGCGGAGAAAGAATCAGCTTCTGGTCGATACATTTGCTGTGCTCATAATACTAGTGTTCCTGAGCTGGCAAAGTTTCTCAGCAAACGATACCCTCAGTATAAAATTCCAACTGAATTTGATGATATCCCCTCCAAGGCAAAGATAATAATCTCTTCTGAGAAGCTTATCAAAGAAGGGTTCAGTTTCAAGTATGGGATTGAAGAAATCTATGACCAGACTGTGGAGTACTTGAAGACTAAGGGGGCCCTCAAGAACTAAATTCTGATCATGTCAATGCTCTAGCAAATTTCACGCTTATGTAATTGCGAAGTTCAGTGTGACATGTTAAGTGAATAATAAGTATAGATGGAGGGAACAATAGGTTCATCTCTGTCAATCCCCCAGTGTATTACCACCTCATTAAATCTCTCTGGTACATGCTATGATATATTGATATCGCCACTTTATTAAAAGGATAGAAAGGAGAGCACAATCAATCTACTGTCAAGTTTGGATTCGATTATGCTTACTGTTCAAATCTTATGTCCACGCTTTTTAACTACAAGCACAGATAATATGAGCTTCAATGATCAAACCTGCCAAGTCAAGCCATAGAGATCTTTGAATCTGAACCGAAAAATTGAAGACTTGATATGCATGAAACACATACTTTATAATTCCAGCAAGGTAAAGAAGTTAAATCGTTAACCAAGTAAACAAAATTAAAAGTGGATATTTACACGTCCAAGAACAATGGCAGACTCCAATGATTATCGGCTATGTAGTCTACGCAGCACCTTTGAACACTCAATTGATGAAAAGTCATGAGTTTTTAGCTGATCTACTTCAATGGACACTTTCTTTGATGCAGCAGGAGATGTTCGGCTAGAATTTCTACTATGCTTCTTATAAAGCTGAGACAATGCTTGAACAACGTCCCTCATTGAAGGTCGGAATTTGGAAACTCCATTGACACATTTGAATGCAAGTGAAGCCATGCCATTAAGCTTGTGCACATCATAGTTTCCATTCAGTTGCGAATCCACAATTTCTTCCCATCCAACCTTGCCCTCACTTTCCATGGCTGCCTAATCATAACGAGAAAGANATACTGTGTGAATCCCAAAACATAAGATCTGGCTCCTCTAAAGTGAGTCAGTGAGTAGCTCACTTTAGAGTGTAAATTAAACAATCTCAGCCATTAATGAATAAATCAATGGTTGATATTACAAACACATGTATAACAAATCATGCATGTGTTACATAAAGGTTATATACTAATATTTATTTTCAAATGCACCAAAGAATATGTAAGCACACCAGCAAAAGCACACTCATAGAAGCCCACATGCAGACATTGTTCTTACTAGTTTTACATATTCCATGAGTCCCTGCTGTGGATTCCTGCCAGTAATAAGCTCAAACAGTAGCACACCAAAACTATAAACATCACTTTTCTTAGTGAAGGTTCTTGTAGACATATACTCAGGATCAAGATATCCAAAAGTTCCACTGACATTTGACGTACGAGGTTTGATCATCTCTGGTCTGGAAAGCCCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00044	436775	447586	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K08695	ANR	EC:1.3.1.77	Flavonoid biosynthesis	map00941

Gene Ontology

molecular_function

GO:0003824 catalytic activity

GO:0050662 coenzyme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000044s00005205.1	PF01370.16	Epimerase	15	265	3.70E-21
Glyur000044s00005205.1	PF01370.16	Epimerase	336	586	3.80E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.084
SRR1783600	control	10.097
SRR1783602	moderate drought stress	14.907
SRR1811619	moderate drought stress	14.992

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.023
DRR006520	Root Summer glycyrrhizin high producing strain	3.952
DRR006521	Root Winter glycyrrhizin high producing strain	17.044
DRR006522	Root Winter glycyrrhizin high producing strain	17.142
DRR006523	Root Summer glycyrrhizin low producing strain	4.922
DRR006524	Root Summer glycyrrhizin low producing strain	4.827
DRR006525	Leaf Summer glycyrrhizin high producing strain	98.799
DRR006526	Leaf Summer glycyrrhizin high producing strain	99.087

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	19.016
SRR2868004	Drought Stress (root)	32.617
SRR2967015	Control (root)	31.523

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	88.125
SRR9715740	Leaf	8.617
SRR9715741	Leaf	33.718
SRR9715739	Root	6.101
SRR9715742	Root	7.159
SRR9715743	Root	6.480

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	15.898
SRR8749028	MeJA induced 9h	11.825
SRR8749029	MeJA induced 9h	10.716
SRR8749030	Uninduced	27.159
SRR8749031	Uninduced	18.993
SRR8749032	Uninduced	13.116

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	32.012
SRR8400027	Control - Root	17.963