Gene detail

Gene detail information of Glyur000044s00005200.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G61680.1	3.00E-118	terpene synthase 14
NR	XP_003528417.2	0	PREDICTED: (3S,6E)-nerolidol synthase 2, chloroplastic/mitochondrial-like [Glycine max]
Swissprot	tr\|P0CV94\|NES1_FRAAN	0	(3S,6E)-nerolidol synthase 1
trEMBL	tr\|K7L2K6\|K7L2K6_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA07G30700.2}

Sequence

Transcript Sequence

>Glyur000044s00005200.1
ATGGCGCTGCATTTCAAATCGTTCCTTTTCTCTTCCAAACCCCGAATTGTCACAACAANAGCCCAACTCTCTCAAAGCCTTAGCCCTGATCACAAACTTGATTCTCTTCTTAATCCTATTGCTAACAAATGGAACATTAATGTGGAAGAAGGAAGGTCTAGCGCACTAATAAGACCTAGAGACCTCAGCATTAATCACTACTCGGACAAGTTGGATGTGGTTAAGCATGAACTTAGGAACGTGGGTGAAAATTCACTAAAAGGCTTGTACATGATTGATGCTATGCAGCGCCTAAATATTGATTATCACTTCCAAGAGGAAATAGAAGCATTCCTATGGAGACAGTATGCGAATTCCATCACTAGTGCGTGTGGCTGGGGTAGTCATAATCTCCATGAAACTGCACTTCGCTTCAGGCTATTGAGACAACAAGGTCACTTTGTTCCTGCGGACAAGGAGGGAAAGTTCAACCAAAAACTAGGTGAAGACATCAAAGGAATGATAGATTTATTTGAAGCCTCGCAATTAAGCATAGCAGGGGAATACATACTTGATGAAGCTGGAGAATTTAGCAGGAAGATACTAAGGGAAAGGGTGACTTACCTTGATAACAATATTAATGAAGCCCAGTTTGTAAAGAGAACCTTAGAACACCCTTTTCACAAAAGTTTGCCAATGTTCACCGCTAGAAACTTCTTCAGTACTCATTTACACGGCACAAATAATATATGGTTTGGTTCCTTAAAAGAAGTGGCAATAAAGGATTTTAGTTTGCAGCAATGCTNACACAATCAAGAGATTGTTCAAATTTCGAGTTGGTGGACAGGGCTTGGTTTGGCCAACGAGTTGCAGTATGCCAGAAATCAACCACTTAAATGGTATATTTGGTCGTTGGCATGCCTCACGGATCCTNCTTTATCAGAGGAAAGGGTTGAGCTCACAAAACCAATATCATTAATCTACATACTAGATGACATCTTCGATATTTATGGGACTCTGGATGAGTTAACTCTTTTCACAGAAGCTGTTTCTAGGTGGGATATTACAACTATAGGGAAACTACCAGATTACATGAAAACGTGTTTCAGGGTCCTCTATGATCTGACAAATGAAATCAGCTCCAAGATCTATCAGAAACACGGGTGGGATCCCACAGACTCTCTTCGAAAGACGTGGAAGAGTTTGTGCAAAGCCTTCCTAGTTGAAGCAGAATGGTTTGCTTCAGGGAAGTTGCCTAGTGCTGAAGAGTACTTAAAGAATGGGATAGTAAGCTCTGGAGTGCATATCTTGCTGGTTCACCTTTTCTTTCTTTTGGGTCAAGGATTAACCAAGGAAAACGTTCACATCATAGACACAACCCCAGGCATAATTTCNTCCCCTGCTACAATTCTTCGACTTTGGGATGACTTGGGAAATGCAGAGGACGAGAATCAACAAGGAAATAATGATGGATCGTATGTGAATTGTCTCGTGATGGATCACCCAGAGTACTCCATGAGAAGAGCAAGAGAGGNGGTTATGAGTAAGATCACTGATGCATGGAAAAGCCTCAACCAAGAGTGCCTACTTAACAGCCACTTCCATACAGTATTCACAAAGGCATCACTCAATCTTGCAAGGATGGTGCCACTGATGTATGGTTATNACGATAAGCACTCCCTTCCAGGCCTAGAGGAGCAAGTTAAATTCTTGCCAACATGTTCTTCAAACAAAAGCTCAACTATCATGGGTGTCAAGGCCTATTGTAGTTACTATAATAATAAAACTCTTTCTACCATTGCCTTGAAGCAAAACATCCATACTTCTGAAAATGGGAAAGGCAAGGAGGCTCTTCATATAAGACATGCTAAAGCTTTGGAAGAAGTTAAGCGTGTGCTGGTTAGCAAGACCACAAGAAAAAACATGGACGAAGGTTTATGTATGGTGGACTCCATCCAAAGATTAGGCCTTGATTACCACTTTGAAGAGGAGATTGAAGCAACTCTTAAAAGGATGCATGTGAGGCTTGGAATTCACGGTATCCAACATGGAAGTGATTATCAAGAACTGTCACAAGTTGCATTTCAGTTTCGAATGTTAAGACAAGAAGGGTATTACATTCACTCGGACATATTCGAAAAGTTTTGGGACAACAAAGGCAAACTCAAACATACATTTCGTGAGGATATAGATGGGTTAATTGCCCTGTTTGAAGCCTCTCAACTAAGCATAGAAGGAGAAGAGTGTCTTGATGAAGCAGGGGAGTTCTGCCGCCAGCATCTTAATGTGTGGTTGTCAAAATTCCATGAGCATCCTCAAGTCAAAGTTGTTGCACATACCTTAAGAAGTCCCATTCATAAAAGCTTGTCAAGGTTCAGGAACACAATCTTCCCATTAGAAAATGCAGAATGGACAAGTTGTTTACAAGATCTTTCCATAATAGATACCCAAATGGTTAGATCATCACATCTGAAGGAAATCTTTGCAGTTTCCAAATGGTGGAAAGACTTGGGTTTGGCAAAGGACTTGGAATTTGCTAGAGATGAACCAATTAAATGGTACACGTGGGCCACGGCATGCATCCCAGACCCACGCTTGTCAGAAGAAAGGATTGAGATCACAAAACCGTTGTCCCTAATCTACATCATTGATGATATATTTGATTTTTATGGAAACATTGATGAACTCACTCTCTTTACAGATGCTGTCAAGAGATGGGACTTGGCAGCCATGGAGCAATTACCAGACTGCATGAAAGTGTGCTTCAAGGCTCTTTATGACACAACTAATGAATTTGCATTTAGGACCCACATCAAACATGGATGGAATCCTATAAGCACCTTAGTAAAATCGTGGGTCAGACTCTTGAATGCTTTCCTGCAAGANGCAAAATGGTTTGCTTCGGGGCATGTTCCAAAGTGTGATGAGTACATGAAGAANGCGATAGTCAGCACTGGGGTGCACGTGGCCCTCGTGCACGCATTCTNTTCCATGGGTCAGGGTATCACCGAGGAAACCGTGTCTCTAATGGATGACTTCCCAACCATTGTACATTCAACAGCCACAATTCTAAGGATGTGTGATGACTTGGAAGGCGACAGGGATGTTAAACGTGNTGGGAATGATGGGTCGTATTCGGAGTGCTACATGAAGGAACACCCAGGGGTGTCTATTGAGCAAACAAGGGAGCATATAAGTAAAGAGATTTCATATGCGTGGAAACGACTCAACAAAGAATGTCTGACCCCAAATCCGCTGCCCTCGTCTTTTACGAAAATTTGCCTGAATGCTGCTCGGATGGTACCTCTAATGTACAGTTATGACAACAATAGCCCATCAAAACTAGAGGAGTATGTGAAATCGTTGCTTTATATATGA

Protein Sequence

>Glyur000044s00005200.1
MALHFKSFLFSSKPRIVTTXAQLSQSLSPDHKLDSLLNPIANKWNINVEEGRSSALIRPRDLSINHYSDKLDVVKHELRNVGENSLKGLYMIDAMQRLNIDYHFQEEIEAFLWRQYANSITSACGWGSHNLHETALRFRLLRQQGHFVPADKEGKFNQKLGEDIKGMIDLFEASQLSIAGEYILDEAGEFSRKILRERVTYLDNNINEAQFVKRTLEHPFHKSLPMFTARNFFSTHLHGTNNIWFGSLKEVAIKDFSLQQCXHNQEIVQISSWWTGLGLANELQYARNQPLKWYIWSLACLTDPXLSEERVELTKPISLIYILDDIFDIYGTLDELTLFTEAVSRWDITTIGKLPDYMKTCFRVLYDLTNEISSKIYQKHGWDPTDSLRKTWKSLCKAFLVEAEWFASGKLPSAEEYLKNGIVSSGVHILLVHLFFLLGQGLTKENVHIIDTTPGIISSPATILRLWDDLGNAEDENQQGNNDGSYVNCLVMDHPEYSMRRAREXVMSKITDAWKSLNQECLLNSHFHTVFTKASLNLARMVPLMYGYXDKHSLPGLEEQVKFLPTCSSNKSSTIMGVKAYCSYYNNKTLSTIALKQNIHTSENGKGKEALHIRHAKALEEVKRVLVSKTTRKNMDEGLCMVDSIQRLGLDYHFEEEIEATLKRMHVRLGIHGIQHGSDYQELSQVAFQFRMLRQEGYYIHSDIFEKFWDNKGKLKHTFREDIDGLIALFEASQLSIEGEECLDEAGEFCRQHLNVWLSKFHEHPQVKVVAHTLRSPIHKSLSRFRNTIFPLENAEWTSCLQDLSIIDTQMVRSSHLKEIFAVSKWWKDLGLAKDLEFARDEPIKWYTWATACIPDPRLSEERIEITKPLSLIYIIDDIFDFYGNIDELTLFTDAVKRWDLAAMEQLPDCMKVCFKALYDTTNEFAFRTHIKHGWNPISTLVKSWVRLLNAFLQXAKWFASGHVPKCDEYMKXAIVSTGVHVALVHAFXSMGQGITEETVSLMDDFPTIVHSTATILRMCDDLEGDRDVKRXGNDGSYSECYMKEHPGVSIEQTREHISKEISYAWKRLNKECLTPNPLPSSFTKICLNAARMVPLMYSYDNNSPSKLEEYVKSLLYI

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00044	408552	420334	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K15086	TPS14	EC:4.2.3.25	Monoterpenoid biosynthesis	map00902

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function

GO:0000287 magnesium ion binding

GO:0010333 terpene synthase activity

GO:0016829 lyase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000044s00005200.1	PF01397.16	Terpene_synth	72	207	5.10E-33
Glyur000044s00005200.1	PF03936.11	Terpene_synth_C	250	518	2.40E-63
Glyur000044s00005200.1	PF01397.16	Terpene_synth	601	764	1.70E-40
Glyur000044s00005200.1	PF03936.11	Terpene_synth_C	804	1070	9.30E-68

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.011
SRR1811619	moderate drought stress	0.009

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.097
DRR006520	Root Summer glycyrrhizin high producing strain	0.065
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.002
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.666
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.598

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.037
SRR2868004	Drought Stress (root)	0.039
SRR2967015	Control (root)	0.105

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.661
SRR9715740	Leaf	3.701
SRR9715741	Leaf	4.785
SRR9715739	Root	0.000
SRR9715742	Root	0.161
SRR9715743	Root	0.124

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.101
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.074
SRR8749030	Uninduced	0.094
SRR8749031	Uninduced	0.363
SRR8749032	Uninduced	0.557

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.046
SRR8400027	Control - Root	0.007