Gene detail

Gene detail information of Glyur000044s00005185.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G11340.1	1.00E-137	S-locus lectin protein kinase family protein
NR	AES90487.2	0	G-type lectin S-receptor-like Serine/Threonine-kinase [Medicago truncatula]
Swissprot	tr\|Q9ZT07\|RKS1_ARATH	2.00E-168	G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 (Precursor)
trEMBL	tr\|G7JSX3\|G7JSX3_MEDTR	0	Serine/threonine-protein kinase {ECO:0000256\|PIRNR:PIRNR000641}

Sequence

Transcript Sequence

>Glyur000044s00005185.1
ATGGACTCTGCTAAAAATCTTACCAATTGGCTTCTCAGCTCTTTGTTTCTATTCCTTATCAGCTTCTCATTTTGCTCATGTACCTCTGATACCATATCCAGTGACAAACCCATCAGAGATGGGGAGCTTCTTGTTTCCAAATCCAAAACGTTTGCTCTTGGATTCTTCAGTCCAGGAAAGTCCACCTCCCGCTATGTTGGCATTTGGTACAACANTTTGCCACTCCAAACCGTTGTTTGGGTTGCAAACAGAGATAGTCCCATCAATGACACCTCTGGGGTTCTCTCAATCAACCCAGAAGGAAATCTTGTACTCCACCACAACTCTAGTACTAACACCATTCCCATTTGGTCTACCAATGTTTCACTTTCACAATCATCCCCACAATCCAATATAGCTCAACTCTCGGATATGGCAAACCTTGTCCTGATGCTAAACAACACCAAAAGTGTTATCTGGCAAAGCTTTGATCACCCCACAGACACCATGCTTCCATATCTAAGGCTCGGTTTCGACATAAGAACTAACCAGAGCTGGTTTCTACAATCCTGGAAGAGAGATGATGACCCTGGAGCTGGTGCCTTCACGTTCAAACTCAGCACCAGTGGTAAACCCCAGCTGTTTATGTACAACCATAACCTTCCATGGTGGCGTGGTGGGTCATGGAATGGTGAACTATTTGTTGGTGTACCCAATATGAAACGAGATAATGCCAATTTTAACGTTACTTTTGTGGAAGATGACAACCATGTAGAACTCTCATATAACATGTTTGATAAGNCCGTGCTCTCCAGGGTAGTGGTTCAGCAATCTGGTTACTTTCAAGTATTAACGTGGGATAACCAAAGGGGTCAATGGAACCGGTATTGGTCNGAACCAACAGATCAGTGTGATAACTATGGAACGTGTGGATCAAACAGTAACTGTGACCCTTTGAACTTTGACGACTTTAAGTGTACTTGTTTACCTGGTTTTGAACCCAAATTCCCACGTGATTGGTATGGGAACAGAGATGGGTCAGGAGGGTGTGTGAGGAAGAAAGGTGCNTTAGTTTGTGGGAGTGGAGAAGGGTTTGTAGAAGTTGAAGGGTTGAAGGTTCCTGATACATCAGTGGCAATTGCCAAAGTGGGTTTGAGTTTGGAAGAATGTGAGAAGGAATGCTTGAGAAACTGCTCTTGCACTGCCTATGCAGTTGCTGATGTGAGGAATGGTGGAAGTGGGTGCTTGGCATGGCATGGGGATTTAACGGACACGCAAAAACTAAGTGATCAAGGCCAAGATTTATTTGTACGTGTTGATGCACTTGAACTAGCCAATTACTACAGAAAAAGCAAAGGAGTCCTTGGTAAAAAGAAAATGGNTGTAGTTCTGGTAGCTTCTGTACTTGCACTTGTTCTTCTCCTCCTCTCATGTGTGTATAGCCTGTGGAAGAAAAAAAGAAAAGATAAAATGATGCATCAATTAAACCAAGATTCCTCTGGAGAAGGGAGCAATGGTCGCCTAGTCAATGGACAAGAGATAGCAGTGAAAAGATTGTCCAAAGATTCAGGNCAAGGGACTGAAGAGTTTAAAAATGAAGTTACACTTCTGGTTAAACTCCAGCACAGAAATCTCGTGAGGTTGCTCGGTTGTTGCTTTGAGAAAGAAGAAAGGATGCTAATTTATGAATACCTACCAAACAAAAGCTTGGACTTCTTTATATTTGGTATGCCTTTCTCTAATTCACTCATTGTGTGGACACTTNGGACAGAAGGAAGGGCCTTGGATATAGTTGATTCAACACTAGGCCAGTCTTATCCTCCTTCTGTAGTTCTGAGGTGCATTCAAATTGGACTCTTGTGCGTGCAAGAGAATGCCAAGAATAGACCATCCATGCTAGAAGTTGTTTTCATGCTAGGCAATGAAACACCTCTTTGTCCACCTCAAAAGCCCGCGTTTTTATTCAATGGCNACCAAGATTTGCAAGAATCATCAACATCAGGAGGAGGATCTTCAATAAATGAAGTAACAACAACTACCATCAGTGCTCGCTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00044	319806	330618	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.7.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006468 protein phosphorylation

GO:0048544 recognition of pollen

molecular_function

GO:0004672 protein kinase activity

GO:0004713 protein tyrosine kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000044s00005185.1	PF01453.19	B_lectin	76	190	4.10E-29
Glyur000044s00005185.1	PF00954.15	S_locus_glycop	217	328	4.90E-30
Glyur000044s00005185.1	PF08276.6	PAN_2	352	418	1.20E-22
Glyur000044s00005185.1	PF07714.12	Pkinase_Tyr	503	567	1.20E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.904
SRR1783600	control	1.811
SRR1783602	moderate drought stress	1.810
SRR1811619	moderate drought stress	9.852

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.034
DRR006520	Root Summer glycyrrhizin high producing strain	0.014
DRR006521	Root Winter glycyrrhizin high producing strain	2.039
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	4.195
DRR006524	Root Summer glycyrrhizin low producing strain	4.135
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.914
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.043

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.879
SRR2868004	Drought Stress (root)	0.018
SRR2967015	Control (root)	1.567

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.701
SRR9715740	Leaf	2.257
SRR9715741	Leaf	2.738
SRR9715739	Root	5.763
SRR9715742	Root	0.718
SRR9715743	Root	4.968

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.159
SRR8749028	MeJA induced 9h	4.300
SRR8749029	MeJA induced 9h	6.626
SRR8749030	Uninduced	7.805
SRR8749031	Uninduced	7.151
SRR8749032	Uninduced	8.039

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.275
SRR8400027	Control - Root	0.134