Gene detail

Gene detail information of Glyur000044s00005184.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G13130.1	3.00E-119	Cellulase (glycosyl hydrolase family 5) protein
NR	XP_003608279.1	0	Endoglucanase [Medicago truncatula]
COG	YP_003952726.1	1.00E-31	cellulase [Stigmatella aurantiaca DW4/3-1]
trEMBL	tr\|Q2HTU0\|Q2HTU0_MEDTR	0	Hydrolyzing O-glycosyl compounds hydrolase {ECO:0000313\|EMBL:AES90476.1}

Sequence

Transcript Sequence

>Glyur000044s00005184.1
ATGAAAAGGATGAGCAAGTCCTCTCTAATTTTATTAGTTTTGGTGTGTCTCTTGGCCATATTCACCTCATATTGTAGCTCATTGCCACTCTCAGTTCAAAAGAGATGGATCATCGACGACGCAACGGGAAAACGAGTGAAGCTTCATTGTGCGCATTGGGTGGCTCACGTGAAGCCAATGCTGGCTGAGGGTCTTGACAAGTTGCCATTGCCAGATATCGCTGCTCAAGTGGCTAACGCGGGATTCAATTGTGTTCGTTTCTCGTATGCCACTTACATGTTCACTCGCCATGCCAATCAAACCATTCGTGATACCTTATCTGGTCTCGACATACCGGAGGCCGTGTCGGGTATAGAGAAACACAATCCTTCGGTGTTGAACATGACACATCTTCAAGCCTATGAAGCAGCCATTGATGCTCTCGGGGCACGCGGTATCATGGTGCTCATTGATAACCACGTCAGCATGCCACGTTGGTGTTGTGGTAATGAAGATCAAAATGGGTTTTTTGGGGATAGACATTTCCAACCAGATGAATGGCTACAAGGTTTGGCTTTCATAGCCAAATACTTCAAGGGAAAACCCAATGTGATAGCTATGGACTTGCGGAACGAGCTAAGAGGAGCACGTCAAAATTTGCCCGATTGGTACAAGTACGTGAGCCAAGGAGCTAAGACAATTCACGAGCATAACCCAGATTTGCTAGTTGTTATCTCAGGGTTTAACTTCGACAACGACCTTTCCTTCTTAAAGGATAAGGCCCTTGATCTAAACTTCACCAACAAATTGGTGTATGAGGCACATATTTATTCCTTCTCGGGAAACACAGAAAAGTGGAGTGTGCAGCCAGTGAATTGGGTATGTGCCTCCGTCATTGAAACGTTACACAACCAAGCAGGNTTTCTCCTCAGTGGCAACAACCCATTGCCTCTGTTTATAAGTGAGTTTGGGTACGACATGACTGGTGTTAATTCCGCAGACAATAAGTACTTTCCGTGCTTTGTGTCCTATGCTGCCTCAGTNGACTTGGATTGGAGTTTGTGGGCTTTTGGAGGAAGCTATTACTATAGAGAAGGCACTGTTGGGGCCGGAGAGTCATATGCTGTTATGGACTATGATTGGAAAAATTTCAGGGACCCAAAATTCCCTCAGAAATTTCAGCTTCTACAAAGCATTGTTCAAGATCCAAGTTCAAATCTCTCGAAGTCTCATATAATATTCCATCCATTGACTGGTCAGTGTGCTCATGTGAATGAAAGCAACAATGAACTTGTATTGGGTGATTGCAAGAGTCATAACCGATGGAGTTTTGAAGGAGATGGTTCTCCAATTAGGTTGATGGACTCTCCTCTATGCTTAAAGACAAAGGGTGAAGGGCTTCCCCTGATCCTCTCACAAGATTGCCTTTCTCAAAAAAGTTCATGGAAATCTGTTTCAAAGACTGGTCTTCACTTGGCTACCTCCGATGGAAATGGATCCCTTTTGTGCTTAGAAATGGATTCCGATTCTTCCAAGATAGTCACCAGAAAATGCATCTGCATAGATGATGATGATTCTTCATGTTTGGACAATCCCCAAGGCCAATGGTTCCAACTCATTTCAACCAATGTTTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00044	311430	313925	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH5

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01179	E3.2.1.4	EC:3.2.1.4	Starch and sucrose metabolism	map00500

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000044s00005184.1	PF00150.13	Cellulase	69	351	1.80E-28
Glyur000044s00005184.1	PF00652.17	Ricin_B_lectin	411	511	0.00016

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.023
SRR1783600	control	0.023
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.068
DRR006522	Root Winter glycyrrhizin high producing strain	0.067
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.230
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.244

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.034
SRR2868004	Drought Stress (root)	0.000
SRR2967015	Control (root)	0.016

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.737
SRR9715740	Leaf	0.229
SRR9715741	Leaf	0.162
SRR9715739	Root	0.153
SRR9715742	Root	0.000
SRR9715743	Root	0.038

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.088
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.079
SRR8749031	Uninduced	0.095
SRR8749032	Uninduced	0.119

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.011
SRR8400027	Control - Root	0.011