Gene detail

Gene detail information of Glyur000044s00005181

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G21390.1	3.00E-122	S-locus lectin protein kinase family protein
NR	XP_004504969.1	0	PREDICTED: uncharacterized protein LOC101504189 [Cicer arietinum]
Swissprot	tr\|O81906\|B120_ARATH	2.00E-145	G-type lectin S-receptor-like serine/threonine-protein kinase B120 (Precursor)
trEMBL	tr\|Q2HTU4\|Q2HTU4_MEDTR	0	Serine/threonine-protein kinase {ECO:0000256\|PIRNR:PIRNR000641}

Sequence

Transcript Sequence

>Glyur000044s00005181.1
ATGGGCATGACAATCGGATCCAAAGTCGCGCTTTTTCTTTTCTCCTTCTTCTGTTTCCTCTGTTTTCATCCTCTGTTTTCACATGCAGCCAACAGCATCACACAGGGCGATTCGATAACAGATGGTGTCACTCTGGTGTCAGAGGGTCTCACCTTCGAAATGGGTTTCTTCAGTTTCAACAACTCCTCTTCGAGATACGTTGGGATTTGGTACCACAAGGTTCCAAGCCCTGCATATGTTTGGGTTGCAAACAGAGAAAAACCAATCCAAGGCAGAGGAGGGTCCATCGCAATAAAAAATGATGGAAACTTGGTTGTCCTCGATGGAGAGAAGAACGAGGTGTGGTCCAGTAACGTGACANCTCCCATGAACAACTCTGAAGCCGTTCTTCGTGATGATGGAAACCTTGTTCTCTCAGACACACAAGTTAACAAAGAGGTGTGGCAGAGCTTTGAGGACCCAACTGATACATATCTTCCAGGTATGAAAATTCCAGTGAGCGATGGAATGGAGAATGACGATAATGACCNTGAAACTGAACCTGCCTTCAGGGCATGGCAATCAGCAACGGATCCTTCACCGGGGAACNACACAATGAGGGTTGATTCTGAGGCATCACCACAGATAGTGATTTTGGAAGGGGAGAATAAGAGGAGGTGGAGAAGTGGGTATTGGGATGGTAGAGTTTTCACAGGTGTGCCCAATATGACAGGAAGCTATCTATATGGATTCAGACTCAATGCTGATGAGAATGGAGGAAGGCATTTTATATATGACAGATTGAACAATACTGATAAGATAAGGTTTCAGATAGGCTGGGATGGGTATGAGAGGCAACTAAGGTGGAATGAAGATGAGAAAGAGTGGAGTGTGCTACAAAGTGAGCCTTATAATCAGTGTGNGTTTTATAATTCCTGTGGCAGTTTTGGAGTGTGTGATGTGTCCAATTCACCTATGTGTAGTTGCATACAAGGGTTTGAACCTAGGGATAGGGATTTGTGGAATAGTGGGAACTGGTCAGGAGGGTGTAAGAGGGTGACTCCACTGAAGGCTGAGGGAGCTACTAATGGAAGTGTTGGAGAGGATGGTTTCTTGGTGCAAAGGAATTTGAAGTTGCCGGATTTCGCGAGTCTGGTGAATGTTGTTGATACTGAGGATTGTGAGCGCAATTGTTTGCAGAATAGTTCTTGTACTGCATATACAAATGCTGTTGGAATTGGGTGCATGATTTGGTATGGGGAGTTGGTTGATGTTCAAAGCTTTGAAAATTCTGGAAATACACTGAACATCCGTCTTGCTGATTCTGATTTAGGTGATGGAAAGAAAAAGACCAAGATTTGGATAATATTAGGTGCTGTGGTGGGGCTGATCTGCCTTGGAATCTTTGTATGGCTGGTATGGAGGTTTAAGAGAAAACTCAAAGTTTCCACAGCTTCTTGTTCCAATAATAGTGATATACCAGTCTCTGGACAAACCAAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00044	303254	305118	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0048544 recognition of pollen

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000044s00005181.1	PF01453.19	B_lectin	79	192	4.00E-28
Glyur000044s00005181.1	PF00954.15	S_locus_glycop	220	329	6.70E-30
Glyur000044s00005181.1	PF08276.6	PAN_2	360	418	1.40E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.072
SRR1783600	control	0.050
SRR1783602	moderate drought stress	0.051
SRR1811619	moderate drought stress	0.051

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.293
DRR006520	Root Summer glycyrrhizin high producing strain	0.277
DRR006521	Root Winter glycyrrhizin high producing strain	0.753
DRR006522	Root Winter glycyrrhizin high producing strain	0.776
DRR006523	Root Summer glycyrrhizin low producing strain	0.075
DRR006524	Root Summer glycyrrhizin low producing strain	0.075
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.440
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.439

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.965
SRR2868004	Drought Stress (root)	15.431
SRR2967015	Control (root)	11.386

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.394
SRR9715740	Leaf	0.545
SRR9715741	Leaf	4.348
SRR9715739	Root	0.032
SRR9715742	Root	0.545
SRR9715743	Root	0.259

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.627
SRR8749028	MeJA induced 9h	1.234
SRR8749029	MeJA induced 9h	0.484
SRR8749030	Uninduced	7.548
SRR8749031	Uninduced	40.163
SRR8749032	Uninduced	5.962

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.371
SRR8400027	Control - Root	2.589