Gene detail

Gene detail information of Glyur000044s00005179

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G05150.1	2.00E-83	Octicosapeptide/Phox/Bem1p family protein
NR	XP_007159236.1	0	hypothetical protein PHAVU_002G220700g [Phaseolus vulgaris]
trEMBL	tr\|V7CPR8\|V7CPR8_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW31230.1}

Sequence

Transcript Sequence

>Glyur000044s00005179.1
GGGTCCTGATATATATAAGTGGATAGAGAGCATGCAAGGCATTGCCAGCGGAGAAGGTACGTATCTGAGACTGACGCCGAATCCAAATTAAAAAGAAGTTTCCGCAAAACGCTATCGTNCCGCTCCTCGGCGGAGAATGGCGTCACACTCACCCTACCCACCCGAGTTAGACGCCGACTCCGTGGCCTCCTCCCCTCGCTCCGATCACTTCCACGACGCACCGCCACGTGTCCGCTTCATGTGCAGCTTCGGCGGCAAGATTCTCCCCCGCCCCCACGACAACCAGCTCCGCTACGTCGGCGGCGACACCCGAATCGTCGCCGTCCACCGCTCCATCTCCTTNTCCGCCCTCCTCCACAAGCTCTCCAAACTCTCCGGCATGAGCAACATAACGGCGAAGTACCAGCTTCCAAACGAGGACCTTGACGCGTTGATCTCNGTGACGACGGACGAGGACGTGGAGAACATGATGGAGGAGTACGAGCGCGTGGCACAGAATCAGAACCCGCGATCGGCTCGGCTTCGGCTCTTCCTCTTCCCGGAAGGCGAAGATTCTCGCGCAAACAGCATCAGCTCGCTTCTGAACGGCTCAGCCAAGCGCGAGAACTGGTTCGTCGACGCATTNAACGGCGGCGTTTCGGGTCTCGAGCGAGGCCGCTCCGAAGCCTCTTCCATGGTTTCGGAAGTGCCCGATTACCTCTTCGGGCTGGATCACACCGACGAAACACACCGCGAACCACGACCAAAGGACCGACCAATTCTCCATGACAACGTTTCCGCTTCGGATCCGGGTTCCCCTGCCCCGGTTGTGTCGTCCCCGTTTTGTTCCACGTCATCAGCGCCGTGCGTGCCCTCTATCCCGAACCTTCCCCCGGTTAAAACCAAACCNGAACACCCNGTTGCTGAAACGGAGTCAAAGGAAAATCAAATCGAAGCCGAAACGGGTGGGCAAGGGCAACTGCAAACGAATCTGTACCAGAGTAACCCTGCANCAGCACACTACCCCACAGAAGCTGCTTATTCGGGTCATCATGTTCATGCAACACAGCCACAGGTTCCTGTTTACTATGTTTCGGGTCCGGTNCAACCCGGAACTGTACCCATNCATCGGGTTCCTATGCAGGCACCCTATCATTTCGTTCAGCAACCATATCATGNGGTGATGCCAGCTCAGGTTCCAGTCGGGTACCATCATTTTGGTCCGGGTTCGGGTCAAGTTTATGGTGCGGGGCTCAGGCATGCGACCCCGGTGCAAAACTACAGTCAAACGGCCACGGTGGTTCACGACGGTTTGAAACAACAGGTGTACCAAGCCGTGCCGAACTCCGGTACAGTTCCGGTTTACCAGGCGATGGCAATGANGGGTGGGGATGAACCGCAGAGAGGTGGAGCGGAGTTTGGGACGGGTCGGGGCACCAATTCGCAGAATAACTGAGCTAGTTTCTGTTTCGTTTCGCGTATGTTCTATTACTTCGATCGTGCAAATGGATGCTTAATCTGTGACTGTGTGTCTACATTTTCATTTTTCAGTTTTTATTTGTTTGGTGCACAAAAAACCAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00044	287565	289231	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000044s00005179.1	PF00564.19	PB1	47	135	4.40E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	73.651
SRR1783600	control	73.703
SRR1783602	moderate drought stress	349.638
SRR1811619	moderate drought stress	347.126

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	18.113
DRR006520	Root Summer glycyrrhizin high producing strain	18.003
DRR006521	Root Winter glycyrrhizin high producing strain	10.468
DRR006522	Root Winter glycyrrhizin high producing strain	10.638
DRR006523	Root Summer glycyrrhizin low producing strain	22.474
DRR006524	Root Summer glycyrrhizin low producing strain	22.701
DRR006525	Leaf Summer glycyrrhizin high producing strain	34.190
DRR006526	Leaf Summer glycyrrhizin high producing strain	34.165

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	109.517
SRR2868004	Drought Stress (root)	127.134
SRR2967015	Control (root)	130.386

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	22.552
SRR9715740	Leaf	25.973
SRR9715741	Leaf	24.962
SRR9715739	Root	44.408
SRR9715742	Root	46.439
SRR9715743	Root	43.383

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.759
SRR8749028	MeJA induced 9h	2.696
SRR8749029	MeJA induced 9h	2.452
SRR8749030	Uninduced	0.639
SRR8749031	Uninduced	0.316
SRR8749032	Uninduced	1.128

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	75.319
SRR8400027	Control - Root	57.325