Gene detail information of Glyur000044s00005175.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G21430.1 | 2.00E-120 | Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase |
| NR | XP_003532564.1 | 0 | PREDICTED: uncharacterized protein LOC100810673 [Glycine max] |
| Swissprot | tr|Q9SSE9|JMJ25_ARATH | 1.00E-54 | Lysine-specific demethylase JMJ25 |
| trEMBL | tr|I1KQR1|I1KQR1_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G06460.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00044 | 272134 | 279078 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | Jumonji |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000044s00005175.1 | PF08879.5 | WRC | 22 | 65 | 6.50E-18 |
| Glyur000044s00005175.1 | PF02373.17 | JmjC | 879 | 971 | 6.10E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 11.041 |
| SRR1783600 | control | 10.955 |
| SRR1783602 | moderate drought stress | 16.154 |
| SRR1811619 | moderate drought stress | 15.963 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 16.193 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 15.562 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 8.343 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.170 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 20.128 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 19.865 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.959 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.921 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 20.140 |
| SRR2868004 | Drought Stress (root) | 18.038 |
| SRR2967015 | Control (root) | 19.463 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 10.804 |
| SRR9715740 | Leaf | 9.953 |
| SRR9715741 | Leaf | 9.168 |
| SRR9715739 | Root | 1.277 |
| SRR9715742 | Root | 8.015 |
| SRR9715743 | Root | 6.694 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 20.502 |
| SRR8749028 | MeJA induced 9h | 20.107 |
| SRR8749029 | MeJA induced 9h | 18.143 |
| SRR8749030 | Uninduced | 6.921 |
| SRR8749031 | Uninduced | 8.544 |
| SRR8749032 | Uninduced | 6.674 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 23.018 |
| SRR8400027 | Control - Root | 21.464 |