Gene detail

Gene detail information of Glyur000044s00005174

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G21450.1	1.00E-89	PapD-like superfamily protein
NR	XP_003608266.1	5.80E-153	Vesicle-associated membrane protein-associated protein A [Medicago truncatula]
Swissprot	tr\|Q8VYN2\|VAP42_ARATH	9.00E-123	Vesicle-associated protein 4-2
trEMBL	tr\|Q2HTV7\|Q2HTV7_MEDTR	2.00E-153	Structural molecule protein {ECO:0000313\|EMBL:AES90463.1}

Sequence

Transcript Sequence

>Glyur000044s00005174.1
AATTCATAACCACCCTTCACATCCGCGTTAGCAGCACTTTGAATTTCCGGGTAAACGACGACGTTTACCATCCCCTGCCTTTGAGAGTTGAAACTGTGAAGTAAAAGTCAAGGCTCTCTCGCTCGCTCGCTCGCTTCATTTCCTTCCTTCAGTTGTTGTTTGTTCCTCTTCCTTGTTTCTCACAACAGCTGAGCATGGCCGTAGCTGACCCCAAGCCTCACNCCGAACCTAAGGTCTGGAATTTCTTCAAGCTTCCGTTTCGTCATTCTAGCTCCGNTGCCAATTCCTCCGGCACGACGTCGTCTTCTGCTACCTTTCACCACCACCACCACCACAACCCTCCTCCCCTTGAGGGTTCCACCTCCCACGCCTCCAATTCAGTTTCTTCCGTTGCCAGATCGCTTCTCCCAACACGACGCCGTCTCAAGCTTGATCCCTCCAACAAGCTTTACTTCCCTTATGAGCCGGGCAAACAGGTCAGGAGTGCCATCAGGATTAAAAACACCAGTAAATCTCATGTAGCTTTCAAGTTTCAAACAACTGCACCCAAAAGCTGTTTCATGCGTCCTCCTGGAGCTATCCTTGCACCTGGTGAGAGTATCATAGCAACAGTGTTCAAGTTTGTGGAGCAACCAGAAAAGAATGAAAAGCCCGAAAAAACTGGACTCAAATTTAAAATCATGAGTTTGAAGGTCAAAGGATTAATGGATTACGTCCCTGAACTGTTTGATGAGCAGAAGGACCAGGTAGCAGTTGAGCAGATCTTGCGAGTTGTTTTTCTAGACCCGGAGTGTTCTAGTCCTGCTTTGGAAAAACTGAAGCGACAGCTGGCAGATGCTGATGCTGCCCTTGAAGCACGCAAGAAACCTGCAGAAGATGTGGGTCCTAAAATTATTGGGGAAGGGCTTGTCATAGATGAATGGAAAGAGAGGAGGGAAAGATACCTCGCAAAGCAGCAGGGAGATGTGGTAGTAGATTCTGTATAGGGTGTTGGTCTCGAATGTCTATGATTGAATAGGAAATTACATTGCAGGCAAGGAAGATGTTATCTTCAGAGTAACAATATTAAAATCACGACGACTTTTTGTTAGAAAAATTTAAAGGTGAATGGCAAGTGTACTTCAGAGAAAACTATGCGTGGGTGTGGTGATAATCCTCTATGTAGATAAATGTCATTTTGCTTTCAGGCTTTTTTTTTTGGGAATAATATTTTAATGGGTTGATGTGAAATAGTTTATTCAAGTTATCAAATGATCAATGAATGATTTGCTGCCAATTTGTTATGCTATGGTTTTTTTTTTAAGATGCTGATGGCTGAGATTCTTGACAAAAGAAGATAAGAAGATTGATTTTGAGGAACAAATAGAANATTGATTTTAATACTCGTTAAGTTTGGTATTTCCATAAAATGGGATTACAGGTTTTAAGGAATATGTTGACATCGATCTGTCCTATGTGGATTACTATCGAAAGAAGAAACTGGGTCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00044	251676	255476	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0005789 endoplasmic reticulum membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000044s00005174.1	PF00635.21	Motile_Sperm	77	186	1.70E-29

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	75.647
SRR1783600	control	76.403
SRR1783602	moderate drought stress	46.161
SRR1811619	moderate drought stress	45.516

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	89.439
DRR006520	Root Summer glycyrrhizin high producing strain	88.396
DRR006521	Root Winter glycyrrhizin high producing strain	28.512
DRR006522	Root Winter glycyrrhizin high producing strain	28.361
DRR006523	Root Summer glycyrrhizin low producing strain	225.631
DRR006524	Root Summer glycyrrhizin low producing strain	222.450
DRR006525	Leaf Summer glycyrrhizin high producing strain	46.514
DRR006526	Leaf Summer glycyrrhizin high producing strain	45.593

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	55.705
SRR2868004	Drought Stress (root)	76.239
SRR2967015	Control (root)	65.866

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	140.522
SRR9715740	Leaf	116.537
SRR9715741	Leaf	182.589
SRR9715739	Root	50.634
SRR9715742	Root	108.322
SRR9715743	Root	90.257

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	243.614
SRR8749028	MeJA induced 9h	196.962
SRR8749029	MeJA induced 9h	404.429
SRR8749030	Uninduced	220.592
SRR8749031	Uninduced	278.420
SRR8749032	Uninduced	234.381

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	53.870
SRR8400027	Control - Root	70.383