Gene detail

Gene detail information of Glyur000044s00005173

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G11260.1	0	sugar transporter 1
NR	XP_004504960.1	0	PREDICTED: sugar transport protein 1-like [Cicer arietinum]
COG	YP_003405196.1	2.00E-68	sugar transporter [Haloterrigena turkmenica DSM 5511]
Swissprot	tr\|Q41144\|STC_RICCO	0	Sugar carrier protein C
trEMBL	tr\|O04078\|O04078_VICFA	0	Monosaccharid transport protein {ECO:0000313\|EMBL:CAB07812.1}

Sequence

Transcript Sequence

>Glyur000044s00005173.1
GTTAGGTGGTGTGACGTCGATGGATCCNTTTCTGAAGAAATTCTTCCCGTCGGTGTACCGGAAGAAGAACCTGGACAAGTCGACGAACGAGTACTGTCAGTACGACAGCCAGACACTGACGATGTTCACGTCGTCGCTGTACCTGGCGGCGCTGCTGTCGTCGCTGGTGGCGTCCACCGTCACGCGTAAGTTCGGCCGGAAACTCTCCATGCTTTTCGGAGGCCTTCTCTTCCTTGTCGGTGCCCTCATTAATGGCTTCGCACAACACGTTTGGATGTTGATCGTGGGTCGGATCCTGCTCGGGTTCGGTATCGGTTTCGCCAATCAGTCTGTGCCACTGTACCTCTCTGAGATGGCACCTTACAAATACAGAGGAGCTTTGAATATTGGTTTCCAACTATCAATTACAGTTGGTATACTAGTGGCCAATGTGTTGAACTACTTCTTNGCCAAAATCAAAGGTGGNTGGGGATGGAGGTTGAGTTTGGGTGGTGCAATGGTGCCAGCACTGATAATCACAATTGGGTCACTAGTCCTTCCAGACACCCCCAATTCCATGATCGAACGTGGTGACCGTGACGCAGCAAAGGCTCACCTCAAGAGAATCCGCGGAGTGGAAGACGTTGATGAAGAGTTTGATGACCTTGTGGCAGCTAGTGAAGCGTCCATGCAAGTGGAGCACCCTTGGAGGAACTTGTTGCAGAGGAAGTACAGGCCCCAACTCACCATGGCCGTATTGATTCCCTTCTTCCAGCAATTCACCGGCATCAATGTCATCATGTTCTATGCACCCGTGCTGTTTAATTCAATTGGGTTTAAGGATGATGCTGCCCTTATGTCAGCTGTGATCACTGGTGTTGTTAATGTTATTGCTACTATGGTCTCAATTTATGGAGTTGATAAGTGGGGTAGGAGAGCCCTCTTCCTTGAAGGTGGAGTTCAGATGATCATATGCCAGGCTGTAGTTGCAGCTGCTATTGGAGCCAAGTTTGGAACTGATGGAAACCCTGGTGATTTACCAAAGTGGTATGCTATAGTGGTGGTGCTGTTCATTTGCATCTATGTAGCAGGATTTGCCTGGTCATGGGGTCCCCTTGGTTGGTTGGTACCTAGTGAGATCTTTCCACTAGAGATTCGCTCGGCTGCTCAGAGTGTCAATGTATCGGTGAACATGCTCTTCACGTTCTTTGTTGCCCAAGTTTTCTTGACCATGCTTTGTCACATGAAGTTTGGCTTGTTCATCTTCTTTGGCTTCTTTGTGTTGGTGATGACATTCTTCATATACTTCATGCTTCCTGAAACNAAGGGAATTCCAATTGAAGAGATGACCAGGGTTTGGAAATCACACCCATACTGGTCCAAATTCGTCGATCATGATGACGGTTATGGCAATGGAGTTCAGATGGGCAACGGAGCTATTAAACATGTGTAATTAATTAGTCCTGGTTGTATTTACTTTTTCCTGATCAGTAATTAGTTTTATTTTTTTCTTTTGCTGGGGAAACATACTACTGGTGTCAAAGTCAGTATCAAATGTAACCACACAAAAAATGTCAGTATCAAATGTATTGAGTTACTCCCTGCAAATTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00044	242249	245243	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055085 transmembrane transport

cellular_component

GO:0016020 membrane

GO:0016021 integral component of membrane

molecular_function

GO:0005215 transporter activity

GO:0022857 transmembrane transporter activity

GO:0022891 substrate-specific transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000044s00005173.1	PF00083.19	Sugar_tr	19	440	3.40E-130

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	17.667
SRR1783600	control	17.758
SRR1783602	moderate drought stress	10.403
SRR1811619	moderate drought stress	10.271

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.108
DRR006520	Root Summer glycyrrhizin high producing strain	10.991
DRR006521	Root Winter glycyrrhizin high producing strain	0.139
DRR006522	Root Winter glycyrrhizin high producing strain	0.128
DRR006523	Root Summer glycyrrhizin low producing strain	5.204
DRR006524	Root Summer glycyrrhizin low producing strain	5.102
DRR006525	Leaf Summer glycyrrhizin high producing strain	32.663
DRR006526	Leaf Summer glycyrrhizin high producing strain	32.248

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	148.860
SRR2868004	Drought Stress (root)	170.538
SRR2967015	Control (root)	181.377

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	48.061
SRR9715740	Leaf	20.767
SRR9715741	Leaf	57.378
SRR9715739	Root	34.969
SRR9715742	Root	62.207
SRR9715743	Root	58.746

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	159.758
SRR8749028	MeJA induced 9h	182.648
SRR8749029	MeJA induced 9h	205.527
SRR8749030	Uninduced	26.613
SRR8749031	Uninduced	48.688
SRR8749032	Uninduced	70.251

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	35.557
SRR8400027	Control - Root	44.810