Gene detail

Gene detail information of Glyur000044s00005170

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G61350.1	9.00E-171	ARM repeat superfamily protein
NR	XP_004504963.1	0	PREDICTED: uncharacterized protein LOC101501930 [Cicer arietinum]
trEMBL	tr\|V7CM22\|V7CM22_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW31237.1}

Sequence

Transcript Sequence

>Glyur000044s00005170.1
ATGGGTGGTGAAGAGTTCGCCGGAGAATCCAAAACGGCGGAGGTACCCGCCGGAGCTTCCCGGCTCCGGCGAGCCCTGGGGCTAATCTGTTCCTTACTCTCTCTCTCTCACTCGATCAGGGTCTTCGCCGGAAAATGGCAACTCATTCGTAACAAGCTAGAGGAGCTTCACTCTGGTCTAATCGCCGCCGAGAACTGCGACTCCGGCGAGAATCCGTCGCTCTCGAGGTTGGTATCTTCGATAGTGGCCACCGTGAAGGAGTGCCACGATCTGGGTCAGCGCTGCGTCGATGTCTCCTACAGTGGGAAGCTCTTGATGCAGAGCGATTTGGACGTGGCGTTCGCGAAGCTCGATGGCCTATCGAAGAAGCTCTCGGAGATATACAAGACGGGTATTTTGACAAATGGGTATGCGCTCGTTGTGTCAAAACCGAGTCTTGGTGCTTCCAAAGAGGACATGAGGTTCTACGTGAGGGACTTGTTGACGAGGATGAAGATTGGTGATTTGGGTATGAAGAGACAGGCCCTTAGGAATCTCCTTGAGGTTTTGGTTGAGGATGACAAGTACGTTAAGGTTATTGTGGATGTGAGTGACGTTGTTCATGTGGTGGTGGGTTTTCTGGGTTCTGCTGACGTGGAAATCCAAGAGGAGAGTGCTAAGGTGGTTTCTGTGGTTGCGGGATTCGATTCCTATAAAGGGGTTTTGGTTGGTGCTGGGGTTATTGCCCCGTTGATTCGGGTTTTGGATTGTGGTAGTGAGTTTGGGAAGGTTGCGGCTGCGAGGTGTTTGGTGAAGTTGACTGAGAATTCGGACAATGCTTGGGCTGTTTCGGCTCACGGGGGTGTCACTGCCTTGTTGAATATTTGTGGGAATGCAGATTGTTGTACTAAAGGGGATTTGGTTGGTCCTGCTTGTGGGGTGCTGAGAAATCTCGTTGGTGTTGAGGAAATAAAGAGGTTTATGGTTGAGGAAGGTGCTGTGTCAACGTTTATCAGGCTTGTGAAATCAAAGGAGGAAGCAATTCAGGTGAATTCCATAGGGTTCATTCAGAACATTGCCTCTGGGGATGAATCGGTTAGGCAGATGGTGATTAGAGAAGGTGGAATCCGTGCTTTGTTGCGTGTTTTGGATCCTAAATGGTCCTATTCTTTTAAAACCCGTGAGATAGCAATGAGGGCTATTGAGGATTTGTGTTTTTCTTCACCTAGTTCTGTGAGTGTTTTGATTAGTTATGGTTTTGTGGATCAGCTGCTACTATACTATGTTCGAAATGGGGAGGTTTCAATTCAAGAGCTGGCTCTGAAAGTGGCATTCAGATTGTGTGGAACATCTGAGGAAGCTAAGAAAGCAATGGGTGATGCGGGTTTTATGCCAGAACTTGTCAAGTTTCTAAGTGCAAAATCATTTGAAGTTCGTGAAATGGCAGCTGAGGCACTGTCTGCAATGGTCATGGTGCATAGAAATAGAAAGAGATTTGTGCAGGATGACCATAACATAGCCCTTCTTCTGCAATTACTTGACCCGAAGGAGGGGAATTCAGGTAACAAGAAGTTCTTAATCTCTATCTTGATGTCATTGACGAGTTGCAATAGTGGGAGGAAAAAGATTGTTAGTTCTGGATATGCTAAAAACATAGAGAAACTTGCTGAGGCTGAAGTTTCCTCTGATGCCAAGAGACTTGTCCGGAAGCTATCCACAAACCGATTCCGCAGTATGTTAAGTGGAATCTGGCACTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00044	215144	216880	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005488 binding

GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000044s00005170.1	PF00514.18	Arm	445	480	0.00026

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.963
SRR1783600	control	6.009
SRR1783602	moderate drought stress	4.483
SRR1811619	moderate drought stress	5.439

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.311
DRR006520	Root Summer glycyrrhizin high producing strain	7.159
DRR006521	Root Winter glycyrrhizin high producing strain	0.767
DRR006522	Root Winter glycyrrhizin high producing strain	0.793
DRR006523	Root Summer glycyrrhizin low producing strain	4.247
DRR006524	Root Summer glycyrrhizin low producing strain	4.320
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.921
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.697

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.615
SRR2868004	Drought Stress (root)	9.615
SRR2967015	Control (root)	9.834

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	18.261
SRR9715740	Leaf	12.126
SRR9715741	Leaf	14.979
SRR9715739	Root	8.772
SRR9715742	Root	12.210
SRR9715743	Root	14.338

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.083
SRR8749028	MeJA induced 9h	7.586
SRR8749029	MeJA induced 9h	5.156
SRR8749030	Uninduced	2.497
SRR8749031	Uninduced	1.448
SRR8749032	Uninduced	1.575

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.310
SRR8400027	Control - Root	9.799