Gene detail

Gene detail information of Glyur000044s00005168.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT3G62980.1	F-box/RNI-like superfamily protein
NR	AES90448.2	transport inhibitor response 1 protein [Medicago truncatula]
Swissprot	tr\|Q570C0\|TIR1_ARATH	Protein TRANSPORT INHIBITOR RESPONSE 1
trEMBL	tr\|G7JRV7\|G7JRV7_MEDTR	Transport inhibitor response 1 protein {ECO:0000313\|EMBL:AES90448.2}

Sequence

Transcript Sequence

>Glyur000044s00005168.1
ATACGCCATGGGTGCCCAATGCCTATAGTCCTTTGGCCTCATCATCGGGTAAAGAAAACATGGATGAAAGAGGGTAGCTTTGCAGTCAAAGAGTGAAGGGCACATACATATCAGCAAGTTTTCACCGTTGAGAACCACTCTTAGTACATTGCTTTATTTCCATTACTTGACAAATTTTTTGTGGGTGATTTGGAGAACTTTCTGTCATTCACAGAAACCAATCGAAGCTTCTCTTTTCCTTTTCCCTTTGCATGCTTTTTCCTGCATCTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTTCACTTGGGTTGAAACTTCTTCCTTATTGGTCTTTACCATAATTTAGCAAGGTGGTTGCTCTCAAATCTCATTGTTGATTCATAAGGGTGCTTTAAAGTTTGTTTCTTTTTTNTTTTTTGCTTTTGGAGCTTGTGGTGTTGAATATGGAGTGTAAGAGAAAGAAGGAATCTCCAGAATCAAACAACTTGAACAGCCNAACTTCGGCTTTTCCAGATGAGGTGTTGGAAAGAGTTCTCGGCATGCTGAAATCACGCAAGGACAGAAGCTCAGTTTCATTGGTTTGCAAAGAGTGGTACAACGCTGAGAGATGGTCGAGGAGGAACGTGTTCATAGGGAACTGTTACTCTGTGTCTCCTGAGATCTTGACCCGCAGGTTCCCAAACATACGCAGTGTTACACTCAAAGGGAAGCCTCGTTTCTCAGATTTCAACTTGGTTCCTGCAAATTGGGGTGCTGATATCCATTCATGGCTCCTTGTCTTTGCTGAAAAGTACCCTTTTCTCGAGGAGTTGAGGCTCAAGAGGATGAATGTTACTGATGAGAGCTTGGAGTTTCTGGCTCTTTCGTTTCCCAATTTCAAAGCACTCTCCCTTCTGAGCTGTGATGGATTTAGCACTGATGGGTTGGGTGCAGTTGCCACTAATTGCAAGAATTTAACCGAGCTTGACATACAAGAGAATGGCATTGATGACAGAAGTGGTAATTGGTTGAGTTGCTTCCCAGAAAACTTTACATCATTGGAAGTATTGAACTTTGCCAACCTGCACAATGATGTAAATTATGACGCGCTTGAGAAACTTGTCAGTAGGTGTAAATCATTAAAGACTTTGAAGGTTAATAAAAGTGTAACACTAGGACAATTACAAAGACTACTTGTTCGTGCCCCTCAGTTGTGTGAGCTTGGCAGTGGCTCATTTTCACTAGAGCTGACATCTAAGCAGTATTTAGAGCTTGAAAGTGCATTCAACAATTGCAAAAATCTTCATACCCTTTCTGGTTTATGGGTGGCTACAGCACAATATCTCCCAGTTCTATACCCTGCTTGCACAAATCTGACTTTCTTGAATTTTAGCTATGCTTCTCTTGACAGTGATGATCTTGCTAAGCTTCTTGTTCACTGTCCTAAACTTCAGCGCCTCTGGGTTGTGGACACAGTTGAAGACAAGGGACTGGAAGCTGTTGGATCATACTGTCCATTGCTTGAGGAACTGCGTGTTTTTCCTGCAGATCCCTTTGATGAGGGCATTGCCCATGGTGTTACTGAATCAGGGTTTGTTGCAGTCTCTCAAGGATGCCGGAGACTTCACTATGTCCTCTACTTTTGCCGTCAGATGACCAATGCTGCTGTTGCTACTGTGGTGCAGAACTGCCCCGACTTCACTCATTTCCGGCTCTGCATCATGAACCCTGGTCAGCCAGATTACCTGACAGATGAACCCATGGATGAGGCTTTTGGAGCAGTTGTTAAGACTTGCACCAAACTCCAGAGGCTTGCTGTATCAGGTTCTCTGACTGACCTAACATTTGAGTATATAGGCAAGTATGCCAAGAACTTGGAGACTCTTTCAGTGGCTTTTGCTGGAAGCAGTGATTGGGGAATGCAGTGTGTGCTGAGAGGATGTCCAAAGCTGAGGAAACTTGAGATAAGGGACTGCCCATTTGGCAATGCAGCACTTCTGTCAGGTTTGGAGAAGTATGAGTCAATGAGGTCACTTTGGATGTCAGATTGCAGAGTGACCATGAATGGCTGTAGATTGTTGGCAAAAGAAATGCCTAGGTTGAATGTTGAAGTGATAAAGGAAGACGGAAGCGATGATAGTCAGGCTGAAAGAGTTTATGTTTATCGATCTGTTGCCGGGCCGAGAAGGGATGCCCCTCCATTTGTTCTCACTCTCTGATATGCAAACACTACTCCTTCTTTGAAGCTAAAAAAAGTCCTTGCCTTTGAATGCTTCCATATATGACAAAGCGCACATATTGATAATTAAGCCTCAATAATATGGAAGGTGAAAGGAAGAAAGAGGAGGATTCTGCAAGACTAAAACTCCAATCATGTTGCCAATTCTTGAAACGTAGCCATGGTACATCAATGCCAAAGGATAAGGAAGGCCAGAGACACACAAATAAAGCCATCTTTTGACATCAAATAATTGCAATGAACTTTCCTTCTTTGAGACCAGCTGGGCCCACCAAGAGAAATAATGCAAAACTGTCCATTGCAGATGAGCAAATGTGAGCAAAATAGATGGGTTCCCTCTGAGCAATAATTGTGAACAATATCCAGATGACGTGAAAGATCTGGTATATTGATTACAGGAAGAAAAGTTATTTAATTCCAGAGGATCATGGTAGAAGGAATTTGATGGGTACTTGCTTTAGCAAGCCATGTCTGTGTACTCATGGATATCTCTGGCATTTTGCTGCATGCTCAAGACATTTTGTTGCTGTATTGAAATTATTTATTTATTCCGGAAAAGACAGCTTTCCCCTTCTGATATTGGCTGAAATCATGGTAATAAATGAGATTTAAAAAGATTTTTAAAAAAGAAGTGTATCATGCATGATTGGATAAATTGTAGCAGCATTTTTTTTATTCATATGAAGATCAAGTTCTTTGGATTGTGATAGTCACTTGATTGCATGAAATGAAGATAATTTACTAGGGCAGCGTGATCAAAAGTCAAAACAAATAGGTCGTTATGCAGTCTAAATTCAGACACAGCATAAGGTACCTTGTTCATACGCTNTATCTAGAGCTAGATATGGCGTTATTATGGAGTCTAAAAGCGTGATTAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00044	202220	207602	+

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000044s00005168.1	PF12937.2	F-box-like	22	52	1.40E-05
Glyur000044s00005168.1	PF13516.1	LRR_6	168	185	0.053
Glyur000044s00005168.1	PF13516.1	LRR_6	301	319	1.9

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	12.743
SRR1783600	control	12.629
SRR1783602	moderate drought stress	21.683
SRR1811619	moderate drought stress	21.518

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	18.284
DRR006520	Root Summer glycyrrhizin high producing strain	18.217
DRR006521	Root Winter glycyrrhizin high producing strain	20.563
DRR006522	Root Winter glycyrrhizin high producing strain	20.044
DRR006523	Root Summer glycyrrhizin low producing strain	21.794
DRR006524	Root Summer glycyrrhizin low producing strain	21.760
DRR006525	Leaf Summer glycyrrhizin high producing strain	25.236
DRR006526	Leaf Summer glycyrrhizin high producing strain	25.011

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	40.690
SRR2868004	Drought Stress (root)	46.295
SRR2967015	Control (root)	61.899

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	38.755
SRR9715740	Leaf	55.744
SRR9715741	Leaf	38.519
SRR9715739	Root	3.704
SRR9715742	Root	21.061
SRR9715743	Root	18.639

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	15.781
SRR8749028	MeJA induced 9h	17.096
SRR8749029	MeJA induced 9h	12.859
SRR8749030	Uninduced	17.636
SRR8749031	Uninduced	6.691
SRR8749032	Uninduced	8.271

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	27.107
SRR8400027	Control - Root	29.239