Gene detail

Gene detail information of Glyur000044s00005167

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G05020.1	0	NAD(P)H dehydrogenase B2
NR	XP_007159245.1	0	hypothetical protein PHAVU_002G221500g [Phaseolus vulgaris]
COG	YP_676049.1	1.00E-41	FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Chelativorans sp. BNC1]
Swissprot	tr\|Q94BV7\|NDB2_ARATH	0	External alternative NAD(P)H-ubiquinone oxidoreductase B2, mitochondrial (Precursor)
trEMBL	tr\|V7CM85\|V7CM85_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW31239.1}

Sequence

Transcript Sequence

>Glyur000044s00005167.1
CACGCAATTCGTGTTTTGCTTCTTTCTCTCTCTCCCACCTCCGCGGATTCTTTATTGGCCCCACTTCCTCTTCTCTTGCATTTGAGTAAGAAGAGAAGACACGATAGACTCTCCCCTTTCTCTCTCTACAACTGCCTCCTCCCCTTATTTTCTCCCTCGCTTTCTCCTCCTATCTTCCCTCCCGGAATTTTGGACACGCACACTGCAGATCTTTCCTGCGACAACCTCAGCAGAAAATGCGCACTTTCACTTTCTTCCAACGCGCTTCTAGAGCTTTCCGTGACCATGACTCAAACTTGAAGCTTGTCGTCCTCTGCACCACCCTAAGTGGTGGTGGGCTTTTGGCTTATGGTGAGGCTGTTTCCGCATCGGAAACTGCGGCGACCACCGAGGAGAAGAAAAAAGTGGTGGTGCTGGGAACTGGGTGGGCAGGCACGAGCTTCTTGAGGAACCTGAACAATCCTAGATATGAGGTTCACGTGGTGTCGCCTCGCAATTATTTCGCATTCACTCCTCTGCTGCCCAGCGTTACCTGCGGCACCGTCGAGGCGCGCAGTGTTGTTGAACCCGTCCGCAATATCTTTAGGAAGCAGAAAAAAGTGGACGTTCAATTCAGTGAAGCAGAATGTGTCAAGATTGACGCAGCAAACAGGAAAATTTACTGTCGATCTAATATGAGCAATAACTCGAATGTAAAAGAAGAATTTGTCGTGGACTATGACTACCTAATCATAGCCGTGGGAGCAAATGTCAACACATTTAACACTCCTGGAGTGATGGAGAATTGCCATTTCTTGAAGGAAGTTGAAGATGCACAAAAGATTAGAAGAACTGTGATTGACTGCTTTGAGAGAGCAAGTTTGCCTAGTGTAAGTGAGGAAGAGAAGAAGAGAATTCTTCATTTCGCTATTGTTGGAGGTGGTCCAACTGGAGTGGAGTTTGCAGCCTCGCTTCATGATTTTGTCGCTGAGGATTTGGTCAAGTTATATCCCGCGATAAAAGATTTAGTGAAAATTACGCTTCTGGAGGCTGGAGATCATATTTTGAGCATGTTTGACAAAAGAATCACATCTTTTGCTGAAGACAAGTTCAGAAGAGATGGTATTGATGTGAAAACAGGATCCATGGTCGTGAAGGTATCTGAGAAAGAAATTTCTACTAAAGAAATGAAAAATGGAGGAGAAATTACTACAATTCCATATGGAATGGCTGTCTGGTCAACTGGTATTGGCACTCGTCCATTCATAAAAGATTTTATGACGCAAATTGGTCAGATTAACAGACGTGCCATAGCTACCGATGAATGGTTGAGAGTTGAGGGAACCAACAATGTGTATGCGCTTGGTGATTGTGCTACAATAAACCAGCGGAAAGTCATGGAAGATATTGCGGCAATATTTAAGAAGGCTGACAAAGACAATTCAGGAACACTCACAGTCAAAGAATTTCAAGAGGCATTGGATGACATCTGTGAAAGATACCCTCAGGTGGAGCTATATCTGAAGAATAAACAGATGTACAACATTGCTGATCTGTTGAAGGAATCCAAGGGAGATGTTAGTAAAGAATCTATTGAACTAAGCATCGAAGAACTCAAGACCGCCCTTTCCAATGTGGACTCCCAGATGAAATTTCTTCCTGCTACAGCTCAGGTTGCATCTCAGCAAGGCACCTACCTAGCCAAGTGTTTTGACCGGATGGAAGAGTGTGAAAAAAATCCAGAGGGTCCTATCAGGTTCAGGGGAGAAGGGCGCCATCGGTTCAAACCCTTCAGGTACAAGCATTTAGGTCAATTCGCTCCTCTGGGAGGAGAGCAGGCAGCTGCACAACTTCCTGGAGATTGGGTTTCAATTGGACGCAGCTCTCAATGGCTGTGGTATTCTGTCTATGCAAGCAAGCAAGTCAGCTGGCGCACAAGGGCATTAGTAGTATCAGACTGGACAAGACGCTTTATTTTTGGGAGGGACTCTAGTCAAATCTAAAAGATATTCAACATTTTCCGTAGTCTTGCAGTGGCAATGTTAACACAGCTCGTCAATCTTGAATTTATTCTGATATAGGAAAATTTTTATTTCAATTCCCACATTCTTTGAATAACGCAAGCAGATTCTCAGCGCGGGGATGTCATAGCTGGGATTTGTTATCATGCTTTGCCACTTTTAATTTCATGTATGAATTTTCTTACATGCCCCTTCCCTTTTTTCTTTCACGCTTCTGGTATTGGAATTGCGGCATTAGTGGATCTCCGAGTTTTGCAGACCTATTTCGGAGATGCATTGCTTCGTGATGTTAGCTTCTCATGCCTAATCGTTAATTAATGTTATAATACTTCTGCTCAAGGAATTTNTACGGCTTCTTTCTTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00044	183743	189876	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0005509 calcium ion binding

GO:0016491 oxidoreductase activity

GO:0050660 flavin adenine dinucleotide binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000044s00005167.1	PF07992.9	Pyr_redox_2	56	376	6.80E-33
Glyur000044s00005167.1	PF00070.22	Pyr_redox	222	304	2.00E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.760
SRR1783600	control	8.807
SRR1783602	moderate drought stress	13.798
SRR1811619	moderate drought stress	13.652

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.590
DRR006520	Root Summer glycyrrhizin high producing strain	12.439
DRR006521	Root Winter glycyrrhizin high producing strain	19.971
DRR006522	Root Winter glycyrrhizin high producing strain	19.403
DRR006523	Root Summer glycyrrhizin low producing strain	15.888
DRR006524	Root Summer glycyrrhizin low producing strain	15.901
DRR006525	Leaf Summer glycyrrhizin high producing strain	38.480
DRR006526	Leaf Summer glycyrrhizin high producing strain	38.391

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	100.168
SRR2868004	Drought Stress (root)	86.615
SRR2967015	Control (root)	61.638

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	85.696
SRR9715740	Leaf	59.881
SRR9715741	Leaf	92.453
SRR9715739	Root	12.062
SRR9715742	Root	37.097
SRR9715743	Root	33.207

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	27.554
SRR8749028	MeJA induced 9h	18.666
SRR8749029	MeJA induced 9h	54.888
SRR8749030	Uninduced	50.499
SRR8749031	Uninduced	25.862
SRR8749032	Uninduced	15.661

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	34.067
SRR8400027	Control - Root	39.017