Gene detail information of Glyur000044s00005158 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G61340.1 | 3.00E-25 | F-box family protein |
| NR | AFK39960.1 | 2.21E-74 | unknown [Lotus japonicus] |
| Swissprot | tr|Q8GX77|FB316_ARATH | 2.00E-30 | F-box protein At1g61340 |
| trEMBL | tr|I3SI68|I3SI68_LOTJA | 8.00E-75 | Uncharacterized protein {ECO:0000313|EMBL:AFK39960.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00044 | 147666 | 149519 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.018 |
| SRR1783600 | control | 4.169 |
| SRR1783602 | moderate drought stress | 1.684 |
| SRR1811619 | moderate drought stress | 1.622 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 222.430 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 221.338 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 68.258 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 65.738 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 348.320 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 347.788 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.470 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.336 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 16.641 |
| SRR2868004 | Drought Stress (root) | 24.923 |
| SRR2967015 | Control (root) | 59.732 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 57.448 |
| SRR9715740 | Leaf | 29.549 |
| SRR9715741 | Leaf | 49.375 |
| SRR9715739 | Root | 266.244 |
| SRR9715742 | Root | 324.115 |
| SRR9715743 | Root | 317.518 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 667.710 |
| SRR8749028 | MeJA induced 9h | 556.801 |
| SRR8749029 | MeJA induced 9h | 788.260 |
| SRR8749030 | Uninduced | 471.233 |
| SRR8749031 | Uninduced | 609.390 |
| SRR8749032 | Uninduced | 485.645 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 33.053 |
| SRR8400027 | Control - Root | 128.471 |