Gene detail information of Glyur000044s00005155.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G21470.1 | 3.00E-163 | riboflavin kinase/FMN hydrolase |
| NR | XP_003529296.1 | 0 | PREDICTED: pseudouridine-5'-monophosphatase-like [Glycine max] |
| COG | YP_005067373.1 | 3.00E-40 | hypothetical protein [Arthrospira platensis NIES-39] |
| Swissprot | tr|Q84MD8|FHYRK_ARATH | 0 | Riboflavin kinase |
| trEMBL | tr|I1KLD6|I1KLD6_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G30970.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00044 | 134398 | 137632 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K20884 | FHY | EC:2.7.1.26 3.1.3.102 | Riboflavin metabolism | map00740 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000044s00005155.1 | PF13419.1 | HAD_2 | 61 | 239 | 8.20E-24 |
| Glyur000044s00005155.1 | PF01687.12 | Flavokinase | 285 | 410 | 8.40E-35 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 20.280 |
| SRR1783600 | control | 20.443 |
| SRR1783602 | moderate drought stress | 18.790 |
| SRR1811619 | moderate drought stress | 18.683 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 21.431 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 21.225 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 28.568 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 27.969 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 23.323 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 23.486 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 28.929 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 29.126 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 62.682 |
| SRR2868004 | Drought Stress (root) | 59.874 |
| SRR2967015 | Control (root) | 51.852 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 40.917 |
| SRR9715740 | Leaf | 48.998 |
| SRR9715741 | Leaf | 40.708 |
| SRR9715739 | Root | 18.851 |
| SRR9715742 | Root | 16.463 |
| SRR9715743 | Root | 19.881 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 41.098 |
| SRR8749028 | MeJA induced 9h | 35.515 |
| SRR8749029 | MeJA induced 9h | 55.041 |
| SRR8749030 | Uninduced | 54.956 |
| SRR8749031 | Uninduced | 94.401 |
| SRR8749032 | Uninduced | 57.456 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 46.975 |
| SRR8400027 | Control - Root | 45.187 |