Gene detail

Gene detail information of Glyur000044s00005151

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT4G21530.1	Transducin/WD40 repeat-like superfamily protein
NR	XP_004504978.1	PREDICTED: anaphase-promoting complex subunit 4-like isoform X1 [Cicer arietinum]
Swissprot	tr\|O65418\|APC4_ARATH	Anaphase-promoting complex subunit 4
trEMBL	tr\|G7JRT3\|G7JRT3_MEDTR	Anaphase-promoting complex subunit 4 {ECO:0000313\|EMBL:AES90424.2}

Sequence

Transcript Sequence

>Glyur000044s00005151.1
CCGTTGTAGTTGAGTTCCATCCTCACTTCTCAGTCGAGGTTCAGTTCAGGGTTTTACTTCACCAACGCCATTTGCCCTCTCCTCACATNTCTCTAGCTGAATCACTTTACATATTGGATTTTCTGGACAACCTTAGTGTTCTTCAGCGCTAGATATGGAAACGGATGAGTCCTGCCGTGTGCTCCCCTTTCAGCTGCAATTCGATAAACCCCTCGCTTCTCAGATTAAAATCGCGGAGTGGAATCCTGAGAAGGACTTGCTCGCCATGGTTACTGACGACTCTAAGGTCTTGCTCCATCGTTTCAATTGGCAACGCTTGTGGACCATAACACCAGGAAGATGCATAACGTCCTTGTGTTGGCGACCTGATGGCAAAGCGATTGGTGTTGGGCTTGATGACGGAACGTTGTCACTGTATGATGTNGAAGTGGGTGTGGATCTGTTCCTCTTGAATAGTGCTTTTTTCCTTTGGNAGAATGGAAAATTGTTACGAAGCTTAAAATCACATTGTGCTGCCATCATATGTCTCAACTGGGAGGAGGACAGTCACCTAATTACAGATGACTATGGTCACACTTCAAAGTATGAAGACAGAACCTCCCGTTTCTTTCCTCCTGCTCCAAAAGTTCCTCGGATGCCTGGATTGGTATCTGGGGATAATGGCTTCATGGATGATAGTGAAGATTCATTTCAGGAGCTGTCAAATTCTTCTCACCAACNGTTCAACGTCCTATGTAGTGGAGACAAAGATGGGAATATTTGTTTTAGTATATTTNGCATCTTCCCTATAGGGAAAATTAACATACACAGCCTCACTTTTCCTACTTCTCGTGATGGTGCAGAAGGAAGTAAAAAACTTCTGAATGCTTCTATACACAAGGTTGCTTTATCAAAAGATCTTTGTCGTTTGATAGTCATGTGCTCAGGAGACCTTGTTGAAGTTGTTAATGACTCGGAAGAAATTCACATGGCTGGGCATAATGAGCATGGCCTGCATTGCTTAGCACTGAACACAGCTATATTTTGGAATAGGAAAAATGAGCTCCATCAGGTAGCTCAACAAGCTTCTAACATTGAAGATTTGACTGAGGTTGTTCGGGCNTCATTATCAGTCATGTCTAGGCAGTGGTCTGATGCCATGCACACATTCCAGGAGAAGTTCAGCTCTTTGTCTACTCTGATTATAGATCACGGACTTGATTCCTCTCCTCAAGAAGAGTTTCTGAGCCTTCTGGGTGGTGCAAGGACTAGTCCACCAGTCCATCAATTTCTTGTTAACACTCTTGGTGAAGTGGGTGTCAAGCGCATTTCAAAGGTTCTCTGCGGTGCTGGCAAAGAACTTNAACGTATTGTCTTGGATCACCTCCAGCCCGCTGCAGAAGTTATTGGATTCAGAATGGGAGAACTAAGAGGGCTTTCAAGATGGCGTGCACGCTATCACAACATTGGCTTGGATGAGTCACTCATTAACAATGCAACAGAAAAGGCTGGTATGCTACTTGTACAAGTTGAACGATTTATGAGGGTTCTTTCATCTGTCGTGCAGCAGTATTCAAACTTCTTCAACTGGCTATTAAAGTGNATAAAATTGCTCATGTCAGAACCAAGTGACCAGCTTTTACCATATAACAGTGAACTTGTTATTATATTTCTGAAGTTTCTTTATGAACAAGATCCAGTTAGACAACTGCTGGAAATATCGGAAACAGATTATGATGTTGAAATTGATTTGGAGACAGCAGAAAGAGTTAGAGAATTAGTTCAGTTTGGGGGATTTTCCGACACTGAATATCTAAGGAGAACATTGGCTAAAGAATTTCAGCAGATGGAATTAAGCTTTAAAGAGGCCTTTCAAATGCCTTTTACTACAATCTCAAGAAAGATACTTTGTGAGGATTTATTACCGCTGNTTCCTCTTCCATCTTTGCCAAAAGCACCACCATCCATGAGAATTGCCACTTCAGTATCATATTATGATGAGGATTCCTCTAGAGCTTCTTTGTCAACTGGTCAAAATCGAGTTATCGATTATATATCTTTTCAAGTACCTGATGAGTCTTTCTCAGATGTTGTAAATTGCATATGCATAGTCAGAGGATTTATGCACGACTTAGACTGTCTAAAGAAGGGGCACAGTTCTTTGGAAGCTGTGCTGCTACGTGTTCCTGTTGATTATCAATGTGTGGATCTGTCTTTGTATAAGGATAGTCAAATTGTCTTGTTACTAAACAAAGCTACTAATACGTCAGAAAGTGCTGGAGATGGTTGCATGATGATTATGCAAACAAGTGATCTNCCATATGTCTCTATATCAAGATCTACGTATATAGATGTCTGGAGGTTACAAGAACTGAAGGATTCTGTCGCTTACATGCACATAGGAGATGAGAAAGCTCGAACCNTCCCTCATTCTGTAATTGCTCCCTTGGCAGTTAGTGCATCAAGAGGCGTGGCTTGTGTATTTGCTGCCAGAAAGCGTGCCCTGGTCTACATTTTGGAGGAAGAGGAAGATGAAGATGAGGTCTCAGATGCAGAATAATTCCCTACCAAATTCGTTTTTCCTTTGTTAGCATTTAGTTATTTATTATTTTTGTGTGGGTGTTTTTTTTTTGGGGGCGCGGGGAGGGGGGGTGTGTTGGATAATTAGCTGCCATTTTCTTAATAGTTCTTGAGCATGTGCTATGAGCATAAGCCAAAGGGANAGTACATCCTAAAAGGCTAGTCTGACT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00044	115761	127082	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0030071 regulation of mitotic metaphase/anaphase transition

GO:0031145 anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process

cellular_component
GO:0005680 anaphase-promoting complex

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000044s00005151.1	PF12894.2	Apc4_WD40	12	57	1.10E-15
Glyur000044s00005151.1	PF12896.2	Apc4	280	487	2.50E-49

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.114
SRR1783600	control	8.103
SRR1783602	moderate drought stress	5.606
SRR1811619	moderate drought stress	5.465

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.224
DRR006520	Root Summer glycyrrhizin high producing strain	3.178
DRR006521	Root Winter glycyrrhizin high producing strain	3.879
DRR006522	Root Winter glycyrrhizin high producing strain	3.801
DRR006523	Root Summer glycyrrhizin low producing strain	2.174
DRR006524	Root Summer glycyrrhizin low producing strain	2.092
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.427
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.426

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.772
SRR2868004	Drought Stress (root)	5.988
SRR2967015	Control (root)	6.046

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.137
SRR9715740	Leaf	5.371
SRR9715741	Leaf	5.433
SRR9715739	Root	2.878
SRR9715742	Root	6.320
SRR9715743	Root	5.278

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.959
SRR8749028	MeJA induced 9h	5.537
SRR8749029	MeJA induced 9h	4.288
SRR8749030	Uninduced	1.579
SRR8749031	Uninduced	1.167
SRR8749032	Uninduced	1.680

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.599
SRR8400027	Control - Root	10.718